Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm38049-201ENSMUST00000195698 1372 ntBASIC11.83□□□□□ -0.52
Cdc40Q9DC48 AC101945.2-201ENSMUST00000227886 1377 ntBASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm6458-201ENSMUST00000211573 635 ntBASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 AC133598.1-201ENSMUST00000224327 660 ntBASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm44851-201ENSMUST00000205735 2309 ntBASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdc40Q9DC48 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Gm7029-201ENSMUST00000173226 450 ntBASIC11.82□□□□□ -0.52
Cdc40Q9DC48 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Gm26927-201ENSMUST00000182385 965 ntBASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Gm43133-201ENSMUST00000197472 463 ntBASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Gm17823-201ENSMUST00000217830 1006 ntBASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC11.82□□□□□ -0.52
Cdc40Q9DC48 AC151895.1-201ENSMUST00000219025 1742 ntBASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Gm8706-201ENSMUST00000197372 1491 ntBASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdc40Q9DC48 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms