Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 AC154527.2-201ENSMUST00000225256 1466 ntBASIC12.36□□□□□ -0.43
Col28a1Q2UY11 AC131068.2-201ENSMUST00000226175 1453 ntBASIC12.36□□□□□ -0.43
Col28a1Q2UY11 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Gm12485-201ENSMUST00000119641 291 ntBASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Gm7558-201ENSMUST00000193221 1165 ntBASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Gm5356-201ENSMUST00000093326 615 ntBASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Col28a1Q2UY11 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gm43051-201ENSMUST00000201096 2678 ntBASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Mir692-1-201ENSMUST00000102263 109 ntBASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gm12742-201ENSMUST00000117326 410 ntBASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gm5279-201ENSMUST00000199575 745 ntBASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gm44985-201ENSMUST00000206202 1016 ntBASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gm44799-201ENSMUST00000207639 1202 ntBASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gm7446-201ENSMUST00000221035 1240 ntBASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Col28a1Q2UY11 Gm5780-201ENSMUST00000217774 1834 ntBASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 106.9 ms