Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC13.11□□□□□ -0.31
Sox9Q04887 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC13.11□□□□□ -0.31
Sox9Q04887 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Sox9Q04887 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
Sox9Q04887 Gm38355-201ENSMUST00000192514 1570 ntBASIC13.11□□□□□ -0.31
Sox9Q04887 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Sox9Q04887 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.11□□□□□ -0.31
Sox9Q04887 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Sox9Q04887 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Sox9Q04887 Tmed9-203ENSMUST00000224741 1450 ntBASIC13.1□□□□□ -0.31
Sox9Q04887 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC13.1□□□□□ -0.31
Sox9Q04887 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC13.1□□□□□ -0.31
Sox9Q04887 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Sox9Q04887 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Gm11892-201ENSMUST00000117711 1202 ntBASIC13.1□□□□□ -0.31
Sox9Q04887 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC13.1□□□□□ -0.31
Sox9Q04887 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC13.1□□□□□ -0.31
Sox9Q04887 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.1□□□□□ -0.31
Sox9Q04887 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
Sox9Q04887 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC13.1□□□□□ -0.31
Sox9Q04887 Gm37028-201ENSMUST00000194276 107 ntBASIC13.1□□□□□ -0.31
Sox9Q04887 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC13.1□□□□□ -0.31
Sox9Q04887 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC13.1□□□□□ -0.31
Sox9Q04887 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC13.1□□□□□ -0.31
Sox9Q04887 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Sox9Q04887 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Sox9Q04887 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Matn2-206ENSMUST00000228570 2798 ntBASIC13.1□□□□□ -0.31
Sox9Q04887 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Sox9Q04887 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Sox9Q04887 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC13.1□□□□□ -0.31
Sox9Q04887 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Sox9Q04887 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
Sox9Q04887 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.09□□□□□ -0.31
Sox9Q04887 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Sox9Q04887 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Sox9Q04887 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC13.09□□□□□ -0.31
Sox9Q04887 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Sox9Q04887 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC13.09□□□□□ -0.31
Sox9Q04887 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Gng12-205ENSMUST00000114226 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Sox9Q04887 Mir1901-201ENSMUST00000122616 78 ntBASIC13.09□□□□□ -0.31
Sox9Q04887 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Sox9Q04887 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC13.09□□□□□ -0.31
Sox9Q04887 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC13.09□□□□□ -0.31
Sox9Q04887 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
Sox9Q04887 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC13.09□□□□□ -0.31
Sox9Q04887 Gm9230-201ENSMUST00000188228 532 ntBASIC13.09□□□□□ -0.31
Sox9Q04887 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC13.09□□□□□ -0.31
Sox9Q04887 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC13.09□□□□□ -0.31
Sox9Q04887 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
Sox9Q04887 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Sox9Q04887 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Gm42829-201ENSMUST00000198417 2585 ntBASIC13.09□□□□□ -0.31
Sox9Q04887 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Sox9Q04887 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms