Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC12.6□□□□□ -0.39
Ubp1Q811S7 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 B230112I24Rik-201ENSMUST00000203953 1229 ntBASIC12.6□□□□□ -0.39
Ubp1Q811S7 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ubp1Q811S7 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.59□□□□□ -0.39
Ubp1Q811S7 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Ubp1Q811S7 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Ubp1Q811S7 AC022775.2-201ENSMUST00000227885 646 ntBASIC12.59□□□□□ -0.39
Ubp1Q811S7 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 4930518I15Rik-201ENSMUST00000099141 1331 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ubp1Q811S7 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Ubp1Q811S7 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Ubp1Q811S7 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm12957-201ENSMUST00000117835 377 ntBASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Snora78-201ENSMUST00000158630 128 ntBASIC12.58□□□□□ -0.4
Ubp1Q811S7 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm25927-201ENSMUST00000175058 117 ntBASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm22121-201ENSMUST00000175148 54 ntBASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm5370-201ENSMUST00000187187 574 ntBASIC12.58□□□□□ -0.4
Ubp1Q811S7 AY702102-202ENSMUST00000194651 1173 ntBASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm18916-201ENSMUST00000198264 1246 ntBASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm9728-201ENSMUST00000200197 1055 ntBASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm43416-201ENSMUST00000201916 1015 ntBASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 AC153962.4-201ENSMUST00000217878 242 ntBASIC12.58□□□□□ -0.4
Ubp1Q811S7 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms