Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gm13123-201ENSMUST00000122173 492 ntBASIC12.44□□□□□ -0.42
Msh4Q99MT2 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msh4Q99MT2 AC125350.2-201ENSMUST00000224737 727 ntBASIC12.44□□□□□ -0.42
Msh4Q99MT2 Gm2824-203ENSMUST00000226189 1228 ntBASIC12.44□□□□□ -0.42
Msh4Q99MT2 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msh4Q99MT2 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msh4Q99MT2 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC12.43□□□□□ -0.42
Msh4Q99MT2 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Gm8798-201ENSMUST00000211877 1661 ntBASIC12.43□□□□□ -0.42
Msh4Q99MT2 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Gm2639-201ENSMUST00000156881 1297 ntBASIC12.43□□□□□ -0.42
Msh4Q99MT2 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC12.43□□□□□ -0.42
Msh4Q99MT2 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.43□□□□□ -0.42
Msh4Q99MT2 AC126253.1-201ENSMUST00000227974 824 ntBASIC12.43□□□□□ -0.42
Msh4Q99MT2 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.43□□□□□ -0.42
Msh4Q99MT2 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC12.43□□□□□ -0.42
Msh4Q99MT2 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC12.42□□□□□ -0.42
Msh4Q99MT2 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Gm19931-201ENSMUST00000198920 368 ntBASIC12.42□□□□□ -0.42
Msh4Q99MT2 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Gm10146-201ENSMUST00000072739 309 ntBASIC12.42□□□□□ -0.42
Msh4Q99MT2 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC12.42□□□□□ -0.42
Msh4Q99MT2 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms