Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Ccdc9Q8VC31 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC15.33■□□□□ 0.05
Ccdc9Q8VC31 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Ccdc9Q8VC31 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Ccdc9Q8VC31 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Ccdc9Q8VC31 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Gm18737-201ENSMUST00000173594 937 ntBASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 CT030684.1-201ENSMUST00000227292 914 ntBASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ccdc9Q8VC31 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Gm11025-201ENSMUST00000140773 466 ntBASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Gm8227-201ENSMUST00000223306 571 ntBASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Ccdc9Q8VC31 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Tnfaip8l3-201ENSMUST00000098760 4403 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Muc13-201ENSMUST00000023520 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Gm37333-201ENSMUST00000192904 2251 ntBASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Gm11543-201ENSMUST00000120758 370 ntBASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Gpr146-202ENSMUST00000053120 1040 ntBASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc9Q8VC31 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 95.9 ms