Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Gm43134-201ENSMUST00000199434 1886 ntBASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Gm10156-201ENSMUST00000122364 462 ntBASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Gm18054-201ENSMUST00000207539 555 ntBASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Gm7172-201ENSMUST00000218047 1152 ntBASIC14.34□□□□□ -0.11
Smc1aQ9CU62 AC155237.1-201ENSMUST00000226196 1279 ntBASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Itm2b-204ENSMUST00000228637 783 ntBASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Smc1aQ9CU62 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Smc1aQ9CU62 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Smc1aQ9CU62 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Smc1aQ9CU62 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Smc1aQ9CU62 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Gm45880-201ENSMUST00000213041 853 ntBASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Smc1aQ9CU62 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 CU024892.2-201ENSMUST00000224608 832 ntBASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 CT025624.1-201ENSMUST00000224007 2700 ntBASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Smc1aQ9CU62 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Smc1aQ9CU62 Gm13722-201ENSMUST00000117964 3066 ntBASIC14.31□□□□□ -0.12
Smc1aQ9CU62 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Smc1aQ9CU62 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Smc1aQ9CU62 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Smc1aQ9CU62 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Smc1aQ9CU62 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Smc1aQ9CU62 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Smc1aQ9CU62 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms