Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Gm38241-201ENSMUST00000192641 898 ntBASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Gm44364-201ENSMUST00000198368 141 ntBASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Gm19931-201ENSMUST00000198920 368 ntBASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Gm7783-201ENSMUST00000204795 781 ntBASIC14.93□□□□□ -0.02
Vps53Q8CCB4 AC140406.1-201ENSMUST00000226481 465 ntBASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Snora73a-201ENSMUST00000082453 205 ntBASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Vps53Q8CCB4 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Gm4780-202ENSMUST00000215200 2644 ntBASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Gm7584-201ENSMUST00000175829 940 ntBASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Gm43118-201ENSMUST00000199149 775 ntBASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Gm10268-201ENSMUST00000085340 555 ntBASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Gm9755-201ENSMUST00000032981 1356 ntBASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Gm44401-201ENSMUST00000204462 2375 ntBASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Vps53Q8CCB4 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Gm45643-201ENSMUST00000211364 1484 ntBASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Gm15236-201ENSMUST00000117309 379 ntBASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Gm13342-201ENSMUST00000121055 207 ntBASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Gm2824-203ENSMUST00000226189 1228 ntBASIC14.91□□□□□ -0.02
Vps53Q8CCB4 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms