Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 CT030657.3-201ENSMUST00000222707 1200 ntBASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Gm9396-201ENSMUST00000076703 567 ntBASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Gm24447-201ENSMUST00000083977 338 ntBASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Gm27177-202ENSMUST00000183514 2703 ntBASIC12.46□□□□□ -0.41
Col28a1Q2UY11 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col28a1Q2UY11 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col28a1Q2UY11 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col28a1Q2UY11 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col28a1Q2UY11 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col28a1Q2UY11 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col28a1Q2UY11 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Col28a1Q2UY11 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col28a1Q2UY11 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col28a1Q2UY11 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col28a1Q2UY11 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Paupar-201ENSMUST00000194826 3482 ntBASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Mir6420-201ENSMUST00000185032 102 ntBASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Gm38144-201ENSMUST00000192790 465 ntBASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Gm44124-201ENSMUST00000204159 472 ntBASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Gm42690-201ENSMUST00000197921 1836 ntBASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Gm44942-201ENSMUST00000096093 2072 ntBASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms