Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Gm45186-201ENSMUST00000206874 478 ntBASIC11.07□□□□□ -0.64
Nkx3-1P97436 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
Nkx3-1P97436 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC11.07□□□□□ -0.64
Nkx3-1P97436 AC126253.1-202ENSMUST00000226732 835 ntBASIC11.07□□□□□ -0.64
Nkx3-1P97436 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.07□□□□□ -0.64
Nkx3-1P97436 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 AC123857.2-201ENSMUST00000225756 1582 ntBASIC11.07□□□□□ -0.64
Nkx3-1P97436 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm9947-201ENSMUST00000067599 2920 ntBASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Mypopos-202ENSMUST00000205975 2321 ntBASIC11.06□□□□□ -0.64
Nkx3-1P97436 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm11930-201ENSMUST00000117788 190 ntBASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm13875-201ENSMUST00000120162 282 ntBASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm38317-201ENSMUST00000195564 343 ntBASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm38092-201ENSMUST00000195600 653 ntBASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm18212-201ENSMUST00000211678 889 ntBASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Gm37737-201ENSMUST00000195013 1638 ntBASIC11.06□□□□□ -0.64
Nkx3-1P97436 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Nkx3-1P97436 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Gm14752-201ENSMUST00000120719 2075 ntBASIC11.05□□□□□ -0.64
Nkx3-1P97436 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.05□□□□□ -0.64
Nkx3-1P97436 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC11.05□□□□□ -0.64
Nkx3-1P97436 Gm15547-201ENSMUST00000122152 333 ntBASIC11.05□□□□□ -0.64
Nkx3-1P97436 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Nkx3-1P97436 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-1P97436 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms