Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Scn11aQ9R053 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Scn11aQ9R053 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Scn11aQ9R053 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Scn11aQ9R053 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 AC154262.2-202ENSMUST00000225158 1331 ntBASIC14.94□□□□□ -0.02
Scn11aQ9R053 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Gm18304-201ENSMUST00000189162 546 ntBASIC14.94□□□□□ -0.02
Scn11aQ9R053 AC153954.1-201ENSMUST00000216959 255 ntBASIC14.94□□□□□ -0.02
Scn11aQ9R053 Gm18730-201ENSMUST00000218038 343 ntBASIC14.94□□□□□ -0.02
Scn11aQ9R053 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC14.94□□□□□ -0.02
Scn11aQ9R053 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC14.93□□□□□ -0.02
Scn11aQ9R053 Rn7s6-201ENSMUST00000175005 291 ntBASIC14.93□□□□□ -0.02
Scn11aQ9R053 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Gm12795-201ENSMUST00000117594 539 ntBASIC14.93□□□□□ -0.02
Scn11aQ9R053 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC14.93□□□□□ -0.02
Scn11aQ9R053 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC14.93□□□□□ -0.02
Scn11aQ9R053 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Gm43721-201ENSMUST00000199677 2313 ntBASIC14.93□□□□□ -0.02
Scn11aQ9R053 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Scn11aQ9R053 Gm37691-201ENSMUST00000192147 2573 ntBASIC14.92□□□□□ -0.02
Scn11aQ9R053 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Gm13888-201ENSMUST00000119148 422 ntBASIC14.92□□□□□ -0.02
Scn11aQ9R053 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Gm19353-201ENSMUST00000184561 445 ntBASIC14.92□□□□□ -0.02
Scn11aQ9R053 Gm5455-201ENSMUST00000058710 715 ntBASIC14.92□□□□□ -0.02
Scn11aQ9R053 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 AC159308.2-201ENSMUST00000213592 2325 ntBASIC14.92□□□□□ -0.02
Scn11aQ9R053 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Scn11aQ9R053 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms