Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Fsd2-201ENSMUST00000042318 3985 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Gm18195-201ENSMUST00000207604 706 ntBASIC11.46□□□□□ -0.57
Trem1Q9JKE2 AC093022.5-201ENSMUST00000226841 1079 ntBASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Gm5989-201ENSMUST00000096092 2077 ntBASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Satb1-207ENSMUST00000140979 3748 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Camk2g-201ENSMUST00000071816 3703 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Trem1Q9JKE2 Vezt-202ENSMUST00000118077 2223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Gm3052-202ENSMUST00000188254 2224 ntBASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Gm15427-201ENSMUST00000117288 531 ntBASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Gm13823-201ENSMUST00000119930 345 ntBASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Gm3809-201ENSMUST00000180973 1006 ntBASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Gm29741-201ENSMUST00000192667 421 ntBASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Eya1-209ENSMUST00000190337 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 AC155298.2-201ENSMUST00000225485 6226 ntBASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Zfp617-201ENSMUST00000119003 2920 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 BC001981-202ENSMUST00000191393 1545 ntBASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trem1Q9JKE2 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 AC158529.1-201ENSMUST00000223618 239 ntBASIC11.44□□□□□ -0.58
Trem1Q9JKE2 CT010486.3-201ENSMUST00000224555 811 ntBASIC11.44□□□□□ -0.58
Trem1Q9JKE2 AC149588.3-201ENSMUST00000227515 150 ntBASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Ppargc1b-201ENSMUST00000063307 3330 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trem1Q9JKE2 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms