Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Gm25766-201ENSMUST00000104101 131 ntBASIC10.28□□□□□ -0.76
Chd6A3KFM7 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 AC129975.1-201ENSMUST00000224816 592 ntBASIC10.28□□□□□ -0.76
Chd6A3KFM7 AC134860.1-201ENSMUST00000224867 660 ntBASIC10.28□□□□□ -0.76
Chd6A3KFM7 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Gm45605-201ENSMUST00000210265 4269 ntBASIC10.28□□□□□ -0.76
Chd6A3KFM7 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Chd6A3KFM7 Gm13492-201ENSMUST00000119772 665 ntBASIC10.27□□□□□ -0.76
Chd6A3KFM7 Gm12946-201ENSMUST00000122969 519 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC10.27□□□□□ -0.76
Chd6A3KFM7 Gm44814-201ENSMUST00000207018 434 ntBASIC10.27□□□□□ -0.76
Chd6A3KFM7 Gm45925-201ENSMUST00000218882 744 ntBASIC10.27□□□□□ -0.76
Chd6A3KFM7 AC154759.1-201ENSMUST00000224137 1159 ntBASIC10.27□□□□□ -0.76
Chd6A3KFM7 AC154572.1-201ENSMUST00000226098 1204 ntBASIC10.27□□□□□ -0.76
Chd6A3KFM7 AC108416.1-202ENSMUST00000228927 1201 ntBASIC10.27□□□□□ -0.76
Chd6A3KFM7 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Chd6A3KFM7 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 S100a3-201ENSMUST00000001047 712 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 AA623943-201ENSMUST00000121794 354 ntBASIC10.27□□□□□ -0.77
Chd6A3KFM7 Gm12453-201ENSMUST00000121981 331 ntBASIC10.27□□□□□ -0.77
Chd6A3KFM7 Gm2044-201ENSMUST00000130771 911 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Gm5700-201ENSMUST00000191483 989 ntBASIC10.27□□□□□ -0.77
Chd6A3KFM7 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC10.27□□□□□ -0.77
Chd6A3KFM7 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC10.27□□□□□ -0.77
Chd6A3KFM7 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Vmn1r44-201ENSMUST00000089420 1108 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Gm44981-201ENSMUST00000205549 1943 ntBASIC10.27□□□□□ -0.77
Chd6A3KFM7 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Chd6A3KFM7 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC10.27□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 81.6 ms