Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a1Q04857 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a1Q04857 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC14.21□□□□□ -0.13
Col6a1Q04857 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a1Q04857 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a1Q04857 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col6a1Q04857 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Col6a1Q04857 Gm37644-201ENSMUST00000192190 2270 ntBASIC14.21□□□□□ -0.14
Col6a1Q04857 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col6a1Q04857 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col6a1Q04857 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col6a1Q04857 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Col6a1Q04857 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col6a1Q04857 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC14.2□□□□□ -0.14
Col6a1Q04857 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC14.2□□□□□ -0.14
Col6a1Q04857 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Col6a1Q04857 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Col6a1Q04857 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC14.2□□□□□ -0.14
Col6a1Q04857 Gm14109-201ENSMUST00000118814 309 ntBASIC14.2□□□□□ -0.14
Col6a1Q04857 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Gm27046-201ENSMUST00000182160 463 ntBASIC14.2□□□□□ -0.14
Col6a1Q04857 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Col6a1Q04857 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Col6a1Q04857 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 CU062626.3-201ENSMUST00000225522 1411 ntBASIC14.2□□□□□ -0.14
Col6a1Q04857 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col6a1Q04857 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Col6a1Q04857 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC14.19□□□□□ -0.14
Col6a1Q04857 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Col6a1Q04857 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Gm15547-201ENSMUST00000122152 333 ntBASIC14.19□□□□□ -0.14
Col6a1Q04857 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Col6a1Q04857 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.19□□□□□ -0.14
Col6a1Q04857 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col6a1Q04857 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col6a1Q04857 Gm17208-201ENSMUST00000168388 535 ntBASIC14.18□□□□□ -0.14
Col6a1Q04857 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms