Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp47Q8BY87 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp47Q8BY87 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC18.08■□□□□ 0.48
Usp47Q8BY87 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Usp47Q8BY87 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Gm12314-201ENSMUST00000118104 538 ntBASIC18.07■□□□□ 0.48
Usp47Q8BY87 Gm14726-201ENSMUST00000120623 896 ntBASIC18.07■□□□□ 0.48
Usp47Q8BY87 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Gm24845-201ENSMUST00000158034 109 ntBASIC18.07■□□□□ 0.48
Usp47Q8BY87 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Gm20482-202ENSMUST00000174729 825 ntBASIC18.07■□□□□ 0.48
Usp47Q8BY87 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC18.07■□□□□ 0.48
Usp47Q8BY87 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Gm38577-201ENSMUST00000221531 4545 ntBASIC18.07■□□□□ 0.48
Usp47Q8BY87 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC18.07■□□□□ 0.48
Usp47Q8BY87 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Ssr1-203ENSMUST00000225246 1825 ntBASIC18.07■□□□□ 0.48
Usp47Q8BY87 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Usp47Q8BY87 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Usp47Q8BY87 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC18.06■□□□□ 0.48
Usp47Q8BY87 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC18.06■□□□□ 0.48
Usp47Q8BY87 AC241621.2-201ENSMUST00000223991 2151 ntBASIC18.06■□□□□ 0.48
Usp47Q8BY87 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Usp47Q8BY87 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC18.05■□□□□ 0.48
Usp47Q8BY87 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Gm27243-201ENSMUST00000183964 521 ntBASIC18.05■□□□□ 0.48
Usp47Q8BY87 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC18.05■□□□□ 0.48
Usp47Q8BY87 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usp47Q8BY87 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Usp47Q8BY87 CT009713.10-202ENSMUST00000225734 696 ntBASIC18.04■□□□□ 0.48
Usp47Q8BY87 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms