Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col28a1Q2UY11 Gm44292-201ENSMUST00000205194 2364 ntBASIC12.54□□□□□ -0.4
Col28a1Q2UY11 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Gm17150-201ENSMUST00000165577 381 ntBASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 AC154846.1-201ENSMUST00000226278 862 ntBASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Gm9899-201ENSMUST00000065519 555 ntBASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col28a1Q2UY11 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col28a1Q2UY11 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col28a1Q2UY11 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col28a1Q2UY11 Gm37015-201ENSMUST00000192763 1521 ntBASIC12.52□□□□□ -0.4
Col28a1Q2UY11 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col28a1Q2UY11 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Col28a1Q2UY11 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col28a1Q2UY11 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col28a1Q2UY11 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Col28a1Q2UY11 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col28a1Q2UY11 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Gm15806-201ENSMUST00000120696 955 ntBASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Gm18905-201ENSMUST00000205454 928 ntBASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Gm45484-201ENSMUST00000210310 1141 ntBASIC12.52□□□□□ -0.41
Col28a1Q2UY11 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 AC159006.1-201ENSMUST00000226396 258 ntBASIC12.52□□□□□ -0.41
Col28a1Q2UY11 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col28a1Q2UY11 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 73 ms