Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm5639-201ENSMUST00000122305 2403 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Gm8862-201ENSMUST00000198379 1346 ntBASIC11.12□□□□□ -0.63
Nkx3-1P97436 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Rubie-203ENSMUST00000227803 2430 ntBASIC11.12□□□□□ -0.63
Nkx3-1P97436 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Gm2546-201ENSMUST00000182630 991 ntBASIC11.12□□□□□ -0.63
Nkx3-1P97436 Gm9061-201ENSMUST00000182707 1006 ntBASIC11.12□□□□□ -0.63
Nkx3-1P97436 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Gm8099-201ENSMUST00000200510 742 ntBASIC11.12□□□□□ -0.63
Nkx3-1P97436 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC11.12□□□□□ -0.63
Nkx3-1P97436 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Gm38346-201ENSMUST00000192379 2639 ntBASIC11.12□□□□□ -0.63
Nkx3-1P97436 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Il17rd-203ENSMUST00000225146 3366 ntBASIC11.12□□□□□ -0.63
Nkx3-1P97436 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Nkx3-1P97436 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Gm23270-201ENSMUST00000104055 131 ntBASIC11.11□□□□□ -0.63
Nkx3-1P97436 Gm11531-201ENSMUST00000117614 555 ntBASIC11.11□□□□□ -0.63
Nkx3-1P97436 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.11□□□□□ -0.63
Nkx3-1P97436 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Gm44772-201ENSMUST00000207623 1191 ntBASIC11.11□□□□□ -0.63
Nkx3-1P97436 Gm5950-201ENSMUST00000213337 772 ntBASIC11.11□□□□□ -0.63
Nkx3-1P97436 AC166051.1-201ENSMUST00000214313 210 ntBASIC11.11□□□□□ -0.63
Nkx3-1P97436 Gm18615-201ENSMUST00000222919 1031 ntBASIC11.11□□□□□ -0.63
Nkx3-1P97436 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Nkx3-1P97436 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC11.11□□□□□ -0.63
Nkx3-1P97436 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC11.11□□□□□ -0.63
Nkx3-1P97436 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 66.9 ms