Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Col1a1P11087 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC14.88□□□□□ -0.03
Col1a1P11087 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Col1a1P11087 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Col1a1P11087 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
Col1a1P11087 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Col1a1P11087 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
Col1a1P11087 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.88□□□□□ -0.03
Col1a1P11087 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC14.88□□□□□ -0.03
Col1a1P11087 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC14.88□□□□□ -0.03
Col1a1P11087 AC123619.2-202ENSMUST00000225097 1568 ntBASIC14.88□□□□□ -0.03
Col1a1P11087 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC14.88□□□□□ -0.03
Col1a1P11087 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC14.88□□□□□ -0.03
Col1a1P11087 Gm13888-201ENSMUST00000119148 422 ntBASIC14.88□□□□□ -0.03
Col1a1P11087 Gm14460-201ENSMUST00000121511 639 ntBASIC14.88□□□□□ -0.03
Col1a1P11087 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC14.88□□□□□ -0.03
Col1a1P11087 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col1a1P11087 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col1a1P11087 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col1a1P11087 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
Col1a1P11087 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.87□□□□□ -0.03
Col1a1P11087 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Col1a1P11087 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Gm5525-201ENSMUST00000190438 1312 ntBASIC14.87□□□□□ -0.03
Col1a1P11087 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Col1a1P11087 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC14.87□□□□□ -0.03
Col1a1P11087 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Gm8798-201ENSMUST00000211877 1661 ntBASIC14.87□□□□□ -0.03
Col1a1P11087 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.87□□□□□ -0.03
Col1a1P11087 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC14.87□□□□□ -0.03
Col1a1P11087 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Selenot-ps-201ENSMUST00000119098 593 ntBASIC14.87□□□□□ -0.03
Col1a1P11087 Mir7677-201ENSMUST00000184226 67 ntBASIC14.87□□□□□ -0.03
Col1a1P11087 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC14.87□□□□□ -0.03
Col1a1P11087 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Olfr1347-205ENSMUST00000220413 964 ntBASIC14.87□□□□□ -0.03
Col1a1P11087 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Col1a1P11087 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col1a1P11087 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Col1a1P11087 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
Col1a1P11087 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC14.86□□□□□ -0.03
Col1a1P11087 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Col1a1P11087 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col1a1P11087 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms