Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
Scn11aQ9R053 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC15.03■□□□□ -0
Scn11aQ9R053 Gm4607-201ENSMUST00000206649 577 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC15.03■□□□□ -0
Scn11aQ9R053 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC15.03■□□□□ -0
Scn11aQ9R053 AC169036.1-201ENSMUST00000227994 296 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Scn11aQ9R053 Gm45643-201ENSMUST00000211364 1484 ntBASIC15.03■□□□□ -0
Scn11aQ9R053 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Scn11aQ9R053 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Scn11aQ9R053 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
Scn11aQ9R053 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Scn11aQ9R053 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Scn11aQ9R053 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Scn11aQ9R053 Gm11340-201ENSMUST00000119226 412 ntBASIC15.02□□□□□ -0.01
Scn11aQ9R053 Gm16397-201ENSMUST00000122201 494 ntBASIC15.02□□□□□ -0.01
Scn11aQ9R053 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Gm9230-201ENSMUST00000188228 532 ntBASIC15.02□□□□□ -0.01
Scn11aQ9R053 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Gm25517-201ENSMUST00000083865 134 ntBASIC15.02□□□□□ -0.01
Scn11aQ9R053 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC15.02□□□□□ -0.01
Scn11aQ9R053 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Scn11aQ9R053 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Gm11989-201ENSMUST00000117240 672 ntBASIC15.01□□□□□ -0.01
Scn11aQ9R053 Gm11362-201ENSMUST00000118838 850 ntBASIC15.01□□□□□ -0.01
Scn11aQ9R053 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Gm10179-201ENSMUST00000086233 688 ntBASIC15.01□□□□□ -0.01
Scn11aQ9R053 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Gm38210-201ENSMUST00000191944 809 ntBASIC15.01□□□□□ -0.01
Scn11aQ9R053 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Gm5369-201ENSMUST00000217499 588 ntBASIC15.01□□□□□ -0.01
Scn11aQ9R053 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Scn11aQ9R053 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Scn11aQ9R053 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Scn11aQ9R053 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC15□□□□□ -0.01
Scn11aQ9R053 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15□□□□□ -0.01
Scn11aQ9R053 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
Scn11aQ9R053 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms