Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp40Q8BWR4 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Gm37795-201ENSMUST00000194216 2459 ntBASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Gm13665-201ENSMUST00000120830 528 ntBASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Gm14999-201ENSMUST00000121039 624 ntBASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Gm39404-201ENSMUST00000216350 313 ntBASIC17.62■□□□□ 0.41
Usp40Q8BWR4 AC155637.1-201ENSMUST00000218560 636 ntBASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
Usp40Q8BWR4 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Gm14130-201ENSMUST00000118417 987 ntBASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Gm13315-201ENSMUST00000120376 991 ntBASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Gm25700-201ENSMUST00000177693 110 ntBASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Gm27341-201ENSMUST00000183570 106 ntBASIC17.61■□□□□ 0.41
Usp40Q8BWR4 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 AC138604.1-201ENSMUST00000226969 739 ntBASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp40Q8BWR4 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Gm11597-201ENSMUST00000121423 964 ntBASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Rps4l-202ENSMUST00000204242 789 ntBASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Gm7619-201ENSMUST00000210649 1282 ntBASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 AC126444.1-201ENSMUST00000225938 1768 ntBASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Usp40Q8BWR4 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms