Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC14.12□□□□□ -0.15
Col11a1Q61245 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col11a1Q61245 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col11a1Q61245 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.12□□□□□ -0.15
Col11a1Q61245 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Gm24231-201ENSMUST00000104315 133 ntBASIC14.12□□□□□ -0.15
Col11a1Q61245 Gm14314-201ENSMUST00000118225 1015 ntBASIC14.12□□□□□ -0.15
Col11a1Q61245 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC14.12□□□□□ -0.15
Col11a1Q61245 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC14.12□□□□□ -0.15
Col11a1Q61245 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC14.12□□□□□ -0.15
Col11a1Q61245 Gm9797-202ENSMUST00000218003 294 ntBASIC14.12□□□□□ -0.15
Col11a1Q61245 AC166341.2-201ENSMUST00000220571 120 ntBASIC14.12□□□□□ -0.15
Col11a1Q61245 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC14.12□□□□□ -0.15
Col11a1Q61245 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC14.12□□□□□ -0.15
Col11a1Q61245 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col11a1Q61245 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Col11a1Q61245 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Gm26286-201ENSMUST00000104166 134 ntBASIC14.11□□□□□ -0.15
Col11a1Q61245 Gm18159-201ENSMUST00000174516 1070 ntBASIC14.11□□□□□ -0.15
Col11a1Q61245 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC14.11□□□□□ -0.15
Col11a1Q61245 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC14.11□□□□□ -0.15
Col11a1Q61245 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Col11a1Q61245 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC14.11□□□□□ -0.15
Col11a1Q61245 n-R5s64-201ENSMUST00000102019 119 ntBASIC14.11□□□□□ -0.15
Col11a1Q61245 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC14.11□□□□□ -0.15
Col11a1Q61245 Gm12628-201ENSMUST00000122193 382 ntBASIC14.11□□□□□ -0.15
Col11a1Q61245 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
Col11a1Q61245 Ighv1-48-201ENSMUST00000191795 294 ntBASIC14.11□□□□□ -0.15
Col11a1Q61245 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC14.11□□□□□ -0.15
Col11a1Q61245 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC14.11□□□□□ -0.15
Col11a1Q61245 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col11a1Q61245 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC14.1□□□□□ -0.15
Col11a1Q61245 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col11a1Q61245 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 144.6 ms