Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ptchd3Q0EEE2 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ptchd3Q0EEE2 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ptchd3Q0EEE2 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Ptchd3Q0EEE2 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Gm22189-201ENSMUST00000103822 86 ntBASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Gm25927-201ENSMUST00000175058 117 ntBASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Gm5279-201ENSMUST00000199575 745 ntBASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Gm7730-201ENSMUST00000212486 454 ntBASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Gm5626-201ENSMUST00000222151 1058 ntBASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Gm40377-201ENSMUST00000204604 2015 ntBASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Gm45266-201ENSMUST00000210111 2173 ntBASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ptchd3Q0EEE2 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ptchd3Q0EEE2 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ptchd3Q0EEE2 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ptchd3Q0EEE2 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC12.44□□□□□ -0.42
Ptchd3Q0EEE2 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
Ptchd3Q0EEE2 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.44□□□□□ -0.42
Ptchd3Q0EEE2 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ptchd3Q0EEE2 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ptchd3Q0EEE2 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ptchd3Q0EEE2 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms