Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Gm26448-201ENSMUST00000082446 203 ntBASIC14.15□□□□□ -0.14
Col11a1Q61245 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Gm9022-201ENSMUST00000182482 992 ntBASIC14.15□□□□□ -0.14
Col11a1Q61245 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Gm8325-201ENSMUST00000099086 453 ntBASIC14.15□□□□□ -0.14
Col11a1Q61245 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.14□□□□□ -0.15
Col11a1Q61245 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC14.14□□□□□ -0.15
Col11a1Q61245 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Col11a1Q61245 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC14.14□□□□□ -0.15
Col11a1Q61245 Rprl1-201ENSMUST00000158050 327 ntBASIC14.14□□□□□ -0.15
Col11a1Q61245 Gm23153-201ENSMUST00000175323 313 ntBASIC14.14□□□□□ -0.15
Col11a1Q61245 Gm37458-201ENSMUST00000194055 410 ntBASIC14.14□□□□□ -0.15
Col11a1Q61245 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC14.14□□□□□ -0.15
Col11a1Q61245 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC14.14□□□□□ -0.15
Col11a1Q61245 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col11a1Q61245 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Col11a1Q61245 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC14.14□□□□□ -0.15
Col11a1Q61245 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col11a1Q61245 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
Col11a1Q61245 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Gm43186-201ENSMUST00000198130 824 ntBASIC14.13□□□□□ -0.15
Col11a1Q61245 Gm42629-201ENSMUST00000199063 1102 ntBASIC14.13□□□□□ -0.15
Col11a1Q61245 AC151275.1-201ENSMUST00000224870 585 ntBASIC14.13□□□□□ -0.15
Col11a1Q61245 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Gm9873-201ENSMUST00000063891 1097 ntBASIC14.13□□□□□ -0.15
Col11a1Q61245 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC14.13□□□□□ -0.15
Col11a1Q61245 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC14.13□□□□□ -0.15
Col11a1Q61245 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Col11a1Q61245 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Gm16071-201ENSMUST00000119589 793 ntBASIC14.13□□□□□ -0.15
Col11a1Q61245 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC14.13□□□□□ -0.15
Col11a1Q61245 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC14.13□□□□□ -0.15
Col11a1Q61245 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col11a1Q61245 Gm17826-201ENSMUST00000189720 798 ntBASIC14.13□□□□□ -0.15
Col11a1Q61245 Gm5852-201ENSMUST00000194119 1021 ntBASIC14.13□□□□□ -0.15
Col11a1Q61245 Gm5542-201ENSMUST00000195485 1089 ntBASIC14.13□□□□□ -0.15
Col11a1Q61245 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC14.13□□□□□ -0.15
Col11a1Q61245 Prrxl1-205ENSMUST00000228878 723 ntBASIC14.13□□□□□ -0.15
Col11a1Q61245 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Col11a1Q61245 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 73.8 ms