Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Scn11aQ9R053 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Scn11aQ9R053 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
Scn11aQ9R053 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
Scn11aQ9R053 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Scn11aQ9R053 Appbp2os-202ENSMUST00000206972 447 ntBASIC25.7■■□□□ 1.7
Scn11aQ9R053 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Scn11aQ9R053 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Scn11aQ9R053 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Scn11aQ9R053 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Scn11aQ9R053 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
Scn11aQ9R053 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Scn11aQ9R053 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Scn11aQ9R053 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
Scn11aQ9R053 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Scn11aQ9R053 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Scn11aQ9R053 Gm12922-201ENSMUST00000120626 809 ntBASIC25.67■■□□□ 1.7
Scn11aQ9R053 Gm27454-201ENSMUST00000185090 204 ntBASIC25.67■■□□□ 1.7
Scn11aQ9R053 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Scn11aQ9R053 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Scn11aQ9R053 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Scn11aQ9R053 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Scn11aQ9R053 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Scn11aQ9R053 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
Scn11aQ9R053 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
Scn11aQ9R053 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Scn11aQ9R053 AC116713.1-201ENSMUST00000215074 430 ntBASIC25.65■■□□□ 1.7
Scn11aQ9R053 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
Scn11aQ9R053 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Scn11aQ9R053 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Scn11aQ9R053 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
Scn11aQ9R053 Gm29257-201ENSMUST00000186115 639 ntBASIC25.64■■□□□ 1.7
Scn11aQ9R053 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC25.64■■□□□ 1.7
Scn11aQ9R053 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Scn11aQ9R053 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Scn11aQ9R053 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.69
Scn11aQ9R053 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.69
Scn11aQ9R053 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC25.64■■□□□ 1.69
Scn11aQ9R053 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
Scn11aQ9R053 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Scn11aQ9R053 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Scn11aQ9R053 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Scn11aQ9R053 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Scn11aQ9R053 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
Scn11aQ9R053 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Scn11aQ9R053 Gm45417-201ENSMUST00000209533 758 ntBASIC25.63■■□□□ 1.69
Scn11aQ9R053 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
Scn11aQ9R053 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC25.63■■□□□ 1.69
Scn11aQ9R053 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Scn11aQ9R053 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
Scn11aQ9R053 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
Scn11aQ9R053 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC25.62■■□□□ 1.69
Scn11aQ9R053 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
Scn11aQ9R053 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
Scn11aQ9R053 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Scn11aQ9R053 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC25.61■■□□□ 1.69
Scn11aQ9R053 AC115037.1-201ENSMUST00000223391 2173 ntBASIC25.61■■□□□ 1.69
Scn11aQ9R053 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Scn11aQ9R053 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Scn11aQ9R053 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Scn11aQ9R053 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Scn11aQ9R053 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
Scn11aQ9R053 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC25.6■■□□□ 1.69
Scn11aQ9R053 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Scn11aQ9R053 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Scn11aQ9R053 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Scn11aQ9R053 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Scn11aQ9R053 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Scn11aQ9R053 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
Scn11aQ9R053 Flvcr1-202ENSMUST00000191946 1216 ntBASIC25.59■■□□□ 1.69
Scn11aQ9R053 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC25.59■■□□□ 1.69
Scn11aQ9R053 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Scn11aQ9R053 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
Scn11aQ9R053 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
Scn11aQ9R053 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Scn11aQ9R053 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC25.57■■□□□ 1.68
Scn11aQ9R053 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Scn11aQ9R053 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Scn11aQ9R053 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Scn11aQ9R053 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
Scn11aQ9R053 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Scn11aQ9R053 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
Scn11aQ9R053 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Scn11aQ9R053 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Scn11aQ9R053 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Scn11aQ9R053 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Scn11aQ9R053 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC25.56■■□□□ 1.68
Scn11aQ9R053 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Scn11aQ9R053 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
Scn11aQ9R053 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Scn11aQ9R053 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Scn11aQ9R053 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
Scn11aQ9R053 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC25.56■■□□□ 1.68
Scn11aQ9R053 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
Scn11aQ9R053 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Scn11aQ9R053 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
Scn11aQ9R053 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC25.54■■□□□ 1.68
Scn11aQ9R053 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Scn11aQ9R053 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC25.53■■□□□ 1.68
Scn11aQ9R053 Gm18284-201ENSMUST00000172604 624 ntBASIC25.53■■□□□ 1.68
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms