Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ube3dQ8BX13 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Ube3dQ8BX13 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ube3dQ8BX13 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ube3dQ8BX13 AC153524.1-201ENSMUST00000220436 1935 ntBASIC18.7■□□□□ 0.58
Ube3dQ8BX13 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC18.7■□□□□ 0.58
Ube3dQ8BX13 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ube3dQ8BX13 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ube3dQ8BX13 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Ube3dQ8BX13 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ube3dQ8BX13 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Ube3dQ8BX13 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ube3dQ8BX13 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ube3dQ8BX13 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Ube3dQ8BX13 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3dQ8BX13 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ube3dQ8BX13 AC153962.1-201ENSMUST00000218530 1948 ntBASIC18.68■□□□□ 0.58
Ube3dQ8BX13 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3dQ8BX13 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3dQ8BX13 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Ube3dQ8BX13 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3dQ8BX13 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Ube3dQ8BX13 Gm22567-201ENSMUST00000175542 342 ntBASIC18.67■□□□□ 0.58
Ube3dQ8BX13 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC18.67■□□□□ 0.58
Ube3dQ8BX13 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3dQ8BX13 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ube3dQ8BX13 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
Ube3dQ8BX13 Gm15820-201ENSMUST00000201566 728 ntBASIC18.66■□□□□ 0.58
Ube3dQ8BX13 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3dQ8BX13 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3dQ8BX13 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Ube3dQ8BX13 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Ube3dQ8BX13 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC18.65■□□□□ 0.58
Ube3dQ8BX13 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
Ube3dQ8BX13 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ube3dQ8BX13 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Ube3dQ8BX13 Hsf1-207ENSMUST00000228371 2102 ntBASIC18.64■□□□□ 0.57
Ube3dQ8BX13 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC18.64■□□□□ 0.57
Ube3dQ8BX13 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC18.64■□□□□ 0.57
Ube3dQ8BX13 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3dQ8BX13 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3dQ8BX13 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3dQ8BX13 Gm37415-201ENSMUST00000192265 2054 ntBASIC18.64■□□□□ 0.57
Ube3dQ8BX13 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3dQ8BX13 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3dQ8BX13 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3dQ8BX13 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3dQ8BX13 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Ube3dQ8BX13 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3dQ8BX13 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.62■□□□□ 0.57
Ube3dQ8BX13 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC18.62■□□□□ 0.57
Ube3dQ8BX13 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3dQ8BX13 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Ube3dQ8BX13 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3dQ8BX13 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3dQ8BX13 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC18.61■□□□□ 0.57
Ube3dQ8BX13 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3dQ8BX13 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3dQ8BX13 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC18.6■□□□□ 0.57
Ube3dQ8BX13 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Ube3dQ8BX13 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC18.6■□□□□ 0.57
Ube3dQ8BX13 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3dQ8BX13 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.6■□□□□ 0.57
Ube3dQ8BX13 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3dQ8BX13 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3dQ8BX13 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Ube3dQ8BX13 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3dQ8BX13 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3dQ8BX13 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Ube3dQ8BX13 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC18.59■□□□□ 0.57
Ube3dQ8BX13 Gm12504-201ENSMUST00000120860 2231 ntBASIC18.59■□□□□ 0.57
Ube3dQ8BX13 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3dQ8BX13 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3dQ8BX13 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3dQ8BX13 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ube3dQ8BX13 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC18.58■□□□□ 0.57
Ube3dQ8BX13 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ube3dQ8BX13 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3dQ8BX13 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3dQ8BX13 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC18.58■□□□□ 0.56
Ube3dQ8BX13 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3dQ8BX13 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3dQ8BX13 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3dQ8BX13 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3dQ8BX13 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Ube3dQ8BX13 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3dQ8BX13 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms