Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Pcdh1F7BJK1 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Pcdh1F7BJK1 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.01■□□□□ 0.63
Pcdh1F7BJK1 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Pcdh1F7BJK1 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC19.01■□□□□ 0.63
Pcdh1F7BJK1 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Pcdh1F7BJK1 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Pcdh1F7BJK1 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Pcdh1F7BJK1 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Pcdh1F7BJK1 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Pcdh1F7BJK1 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19■□□□□ 0.63
Pcdh1F7BJK1 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19■□□□□ 0.63
Pcdh1F7BJK1 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19■□□□□ 0.63
Pcdh1F7BJK1 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Pcdh1F7BJK1 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Pcdh1F7BJK1 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Pcdh1F7BJK1 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Pcdh1F7BJK1 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Pcdh1F7BJK1 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Pcdh1F7BJK1 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC18.98■□□□□ 0.63
Pcdh1F7BJK1 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC18.98■□□□□ 0.63
Pcdh1F7BJK1 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Pcdh1F7BJK1 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Pcdh1F7BJK1 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Pcdh1F7BJK1 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Pcdh1F7BJK1 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Pcdh1F7BJK1 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Pcdh1F7BJK1 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdh1F7BJK1 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
Pcdh1F7BJK1 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdh1F7BJK1 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdh1F7BJK1 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Pcdh1F7BJK1 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Pcdh1F7BJK1 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdh1F7BJK1 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Pcdh1F7BJK1 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 AC164883.3-201ENSMUST00000227396 1774 ntBASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Pcdh1F7BJK1 AC124392.1-201ENSMUST00000225172 5324 ntBASIC18.94■□□□□ 0.62
Pcdh1F7BJK1 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Pcdh1F7BJK1 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Pcdh1F7BJK1 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Pcdh1F7BJK1 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC18.94■□□□□ 0.62
Pcdh1F7BJK1 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Pcdh1F7BJK1 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Pcdh1F7BJK1 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Pcdh1F7BJK1 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Pcdh1F7BJK1 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Gm5987-201ENSMUST00000196433 1151 ntBASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Pcdh1F7BJK1 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdh1F7BJK1 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdh1F7BJK1 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdh1F7BJK1 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdh1F7BJK1 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdh1F7BJK1 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdh1F7BJK1 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms