Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 AC122317.2-201ENSMUST00000218708 1248 ntBASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Trbv3A0A0A6YYE2 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv3A0A0A6YYE2 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv3A0A0A6YYE2 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Gm4799-201ENSMUST00000095396 657 ntBASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv3A0A0A6YYE2 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 Terc-201ENSMUST00000082862 423 ntBASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv3A0A0A6YYE2 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trbv3A0A0A6YYE2 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
Trbv3A0A0A6YYE2 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Trbv3A0A0A6YYE2 AC164883.3-201ENSMUST00000227396 1774 ntBASIC16.27■□□□□ 0.2
Trbv3A0A0A6YYE2 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trbv3A0A0A6YYE2 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC16.27■□□□□ 0.19
Trbv3A0A0A6YYE2 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trbv3A0A0A6YYE2 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv3A0A0A6YYE2 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Trbv3A0A0A6YYE2 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv3A0A0A6YYE2 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv3A0A0A6YYE2 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC16.26■□□□□ 0.19
Trbv3A0A0A6YYE2 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv3A0A0A6YYE2 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv3A0A0A6YYE2 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv3A0A0A6YYE2 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv3A0A0A6YYE2 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv3A0A0A6YYE2 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trbv3A0A0A6YYE2 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv3A0A0A6YYE2 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trbv3A0A0A6YYE2 Iqck-206ENSMUST00000208658 2891 ntBASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Snhg20-203ENSMUST00000182811 2153 ntBASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv3A0A0A6YYE2 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv3A0A0A6YYE2 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms