Protein–RNA interactions for Protein: Q9EQG9

Col4a3bp, Collagen type IV alpha-3-binding protein, mousemouse

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a3bpQ9EQG9 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Col4a3bpQ9EQG9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
Col4a3bpQ9EQG9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.68
Col4a3bpQ9EQG9 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Col4a3bpQ9EQG9 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Col4a3bpQ9EQG9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Col4a3bpQ9EQG9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
Col4a3bpQ9EQG9 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31.63■■■□□ 2.65
Col4a3bpQ9EQG9 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC31.61■■■□□ 2.65
Col4a3bpQ9EQG9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Col4a3bpQ9EQG9 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.64
Col4a3bpQ9EQG9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.53■■■□□ 2.64
Col4a3bpQ9EQG9 Rab21-202ENSMUST00000218831 843 ntBASIC31.53■■■□□ 2.64
Col4a3bpQ9EQG9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col4a3bpQ9EQG9 Gm25262-201ENSMUST00000174934 133 ntBASIC31.52■■■□□ 2.64
Col4a3bpQ9EQG9 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Col4a3bpQ9EQG9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.41■■■□□ 2.62
Col4a3bpQ9EQG9 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
Col4a3bpQ9EQG9 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
Col4a3bpQ9EQG9 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Col4a3bpQ9EQG9 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Col4a3bpQ9EQG9 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Col4a3bpQ9EQG9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Col4a3bpQ9EQG9 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Col4a3bpQ9EQG9 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC31.21■■■□□ 2.59
Col4a3bpQ9EQG9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.2■■■□□ 2.59
Col4a3bpQ9EQG9 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Col4a3bpQ9EQG9 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Col4a3bpQ9EQG9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
Col4a3bpQ9EQG9 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Col4a3bpQ9EQG9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.09■■■□□ 2.57
Col4a3bpQ9EQG9 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Col4a3bpQ9EQG9 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Col4a3bpQ9EQG9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
Col4a3bpQ9EQG9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Col4a3bpQ9EQG9 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.05■■■□□ 2.56
Col4a3bpQ9EQG9 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
Col4a3bpQ9EQG9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31■■■□□ 2.55
Col4a3bpQ9EQG9 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Col4a3bpQ9EQG9 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
Col4a3bpQ9EQG9 Zfp131-207ENSMUST00000224946 1783 ntBASIC30.94■■■□□ 2.54
Col4a3bpQ9EQG9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
Col4a3bpQ9EQG9 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Col4a3bpQ9EQG9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Col4a3bpQ9EQG9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.88■■■□□ 2.53
Col4a3bpQ9EQG9 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC30.86■■■□□ 2.53
Col4a3bpQ9EQG9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
Col4a3bpQ9EQG9 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30.84■■■□□ 2.53
Col4a3bpQ9EQG9 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
Col4a3bpQ9EQG9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.78■■■□□ 2.52
Col4a3bpQ9EQG9 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
Col4a3bpQ9EQG9 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Col4a3bpQ9EQG9 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Col4a3bpQ9EQG9 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
Col4a3bpQ9EQG9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.73■■■□□ 2.51
Col4a3bpQ9EQG9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.72■■■□□ 2.51
Col4a3bpQ9EQG9 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.5
Col4a3bpQ9EQG9 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Col4a3bpQ9EQG9 Gm26115-201ENSMUST00000175605 87 ntBASIC30.67■■■□□ 2.5
Col4a3bpQ9EQG9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Col4a3bpQ9EQG9 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Col4a3bpQ9EQG9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30.63■■■□□ 2.49
Col4a3bpQ9EQG9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.63■■■□□ 2.49
Col4a3bpQ9EQG9 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Col4a3bpQ9EQG9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC30.6■■■□□ 2.49
Col4a3bpQ9EQG9 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Col4a3bpQ9EQG9 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
Col4a3bpQ9EQG9 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col4a3bpQ9EQG9 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Col4a3bpQ9EQG9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Col4a3bpQ9EQG9 Gm8109-201ENSMUST00000194076 746 ntBASIC30.53■■■□□ 2.48
Col4a3bpQ9EQG9 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Col4a3bpQ9EQG9 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Col4a3bpQ9EQG9 Gm2415-204ENSMUST00000190235 2004 ntBASIC30.5■■■□□ 2.47
Col4a3bpQ9EQG9 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Col4a3bpQ9EQG9 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Col4a3bpQ9EQG9 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col4a3bpQ9EQG9 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col4a3bpQ9EQG9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
Col4a3bpQ9EQG9 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Col4a3bpQ9EQG9 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Col4a3bpQ9EQG9 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Col4a3bpQ9EQG9 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.32■■■□□ 2.44
Col4a3bpQ9EQG9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.28■■■□□ 2.44
Col4a3bpQ9EQG9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Col4a3bpQ9EQG9 Gm6658-202ENSMUST00000209493 1885 ntBASIC30.25■■■□□ 2.43
Col4a3bpQ9EQG9 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
Col4a3bpQ9EQG9 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC30.23■■■□□ 2.43
Col4a3bpQ9EQG9 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Col4a3bpQ9EQG9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Col4a3bpQ9EQG9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Col4a3bpQ9EQG9 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Col4a3bpQ9EQG9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.17■■■□□ 2.42
Col4a3bpQ9EQG9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
Col4a3bpQ9EQG9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
Col4a3bpQ9EQG9 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Col4a3bpQ9EQG9 Gm27322-201ENSMUST00000184007 104 ntBASIC30.11■■■□□ 2.41
Col4a3bpQ9EQG9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col4a3bpQ9EQG9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Col4a3bpQ9EQG9 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms