Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trav8d-1Q5R1H8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC22.11■■□□□ 1.13
Trav8d-1Q5R1H8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trav8d-1Q5R1H8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav8d-1Q5R1H8 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav8d-1Q5R1H8 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Trav8d-1Q5R1H8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trav8d-1Q5R1H8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.11
Trav8d-1Q5R1H8 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC22■■□□□ 1.11
Trav8d-1Q5R1H8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
Trav8d-1Q5R1H8 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trav8d-1Q5R1H8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC21.98■■□□□ 1.11
Trav8d-1Q5R1H8 Gm27325-201ENSMUST00000175467 74 ntBASIC21.97■■□□□ 1.11
Trav8d-1Q5R1H8 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trav8d-1Q5R1H8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
Trav8d-1Q5R1H8 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trav8d-1Q5R1H8 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav8d-1Q5R1H8 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Trav8d-1Q5R1H8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC21.8■■□□□ 1.08
Trav8d-1Q5R1H8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trav8d-1Q5R1H8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21.77■■□□□ 1.08
Trav8d-1Q5R1H8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trav8d-1Q5R1H8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav8d-1Q5R1H8 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav8d-1Q5R1H8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC21.73■■□□□ 1.07
Trav8d-1Q5R1H8 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trav8d-1Q5R1H8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav8d-1Q5R1H8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
Trav8d-1Q5R1H8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21.67■■□□□ 1.06
Trav8d-1Q5R1H8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trav8d-1Q5R1H8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Trav8d-1Q5R1H8 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trav8d-1Q5R1H8 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Trav8d-1Q5R1H8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav8d-1Q5R1H8 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trav8d-1Q5R1H8 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trav8d-1Q5R1H8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
Trav8d-1Q5R1H8 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav8d-1Q5R1H8 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav8d-1Q5R1H8 Rab21-202ENSMUST00000218831 843 ntBASIC21.48■■□□□ 1.03
Trav8d-1Q5R1H8 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trav8d-1Q5R1H8 Zxda-201ENSMUST00000117281 2621 ntBASIC21.45■■□□□ 1.02
Trav8d-1Q5R1H8 Gm2415-204ENSMUST00000190235 2004 ntBASIC21.44■■□□□ 1.02
Trav8d-1Q5R1H8 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav8d-1Q5R1H8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Trav8d-1Q5R1H8 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Trav8d-1Q5R1H8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC21.4■■□□□ 1.02
Trav8d-1Q5R1H8 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC21.4■■□□□ 1.02
Trav8d-1Q5R1H8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trav8d-1Q5R1H8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Trav8d-1Q5R1H8 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Trav8d-1Q5R1H8 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC21.39■■□□□ 1.01
Trav8d-1Q5R1H8 Gm25262-201ENSMUST00000174934 133 ntBASIC21.37■■□□□ 1.01
Trav8d-1Q5R1H8 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav8d-1Q5R1H8 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trav8d-1Q5R1H8 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Trav8d-1Q5R1H8 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Trav8d-1Q5R1H8 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav8d-1Q5R1H8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav8d-1Q5R1H8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav8d-1Q5R1H8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav8d-1Q5R1H8 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC21.32■■□□□ 1
Trav8d-1Q5R1H8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trav8d-1Q5R1H8 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21.3■■□□□ 1
Trav8d-1Q5R1H8 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav8d-1Q5R1H8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trav8d-1Q5R1H8 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trav8d-1Q5R1H8 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav8d-1Q5R1H8 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav8d-1Q5R1H8 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav8d-1Q5R1H8 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.16■□□□□ 0.98
Trav8d-1Q5R1H8 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trav8d-1Q5R1H8 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trav8d-1Q5R1H8 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav8d-1Q5R1H8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Trav8d-1Q5R1H8 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Trav8d-1Q5R1H8 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.11■□□□□ 0.97
Trav8d-1Q5R1H8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav8d-1Q5R1H8 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav8d-1Q5R1H8 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Trav8d-1Q5R1H8 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav8d-1Q5R1H8 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav8d-1Q5R1H8 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav8d-1Q5R1H8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav8d-1Q5R1H8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav8d-1Q5R1H8 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav8d-1Q5R1H8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC21.05■□□□□ 0.96
Trav8d-1Q5R1H8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trav8d-1Q5R1H8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.04■□□□□ 0.96
Trav8d-1Q5R1H8 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav8d-1Q5R1H8 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Trav8d-1Q5R1H8 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trav8d-1Q5R1H8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC21.01■□□□□ 0.95
Trav8d-1Q5R1H8 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trav8d-1Q5R1H8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC21■□□□□ 0.95
Trav8d-1Q5R1H8 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.99■□□□□ 0.95
Trav8d-1Q5R1H8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav8d-1Q5R1H8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav8d-1Q5R1H8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav8d-1Q5R1H8 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms