Protein–RNA interactions for Protein: Q5R1C3

Trav3-3, T cell receptor alpha variable 3-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-3Q5R1C3 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav3-3Q5R1C3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav3-3Q5R1C3 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav3-3Q5R1C3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trav3-3Q5R1C3 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav3-3Q5R1C3 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav3-3Q5R1C3 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Trav3-3Q5R1C3 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.17■□□□□ 0.82
Trav3-3Q5R1C3 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trav3-3Q5R1C3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.16■□□□□ 0.82
Trav3-3Q5R1C3 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav3-3Q5R1C3 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Trav3-3Q5R1C3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav3-3Q5R1C3 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trav3-3Q5R1C3 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Trav3-3Q5R1C3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav3-3Q5R1C3 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav3-3Q5R1C3 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav3-3Q5R1C3 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav3-3Q5R1C3 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trav3-3Q5R1C3 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Trav3-3Q5R1C3 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Trav3-3Q5R1C3 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Trav3-3Q5R1C3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav3-3Q5R1C3 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav3-3Q5R1C3 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trav3-3Q5R1C3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Trav3-3Q5R1C3 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trav3-3Q5R1C3 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC19.89■□□□□ 0.77
Trav3-3Q5R1C3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trav3-3Q5R1C3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trav3-3Q5R1C3 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav3-3Q5R1C3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trav3-3Q5R1C3 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trav3-3Q5R1C3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC19.83■□□□□ 0.77
Trav3-3Q5R1C3 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trav3-3Q5R1C3 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trav3-3Q5R1C3 Gm9905-201ENSMUST00000065740 1845 ntBASIC19.79■□□□□ 0.76
Trav3-3Q5R1C3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav3-3Q5R1C3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav3-3Q5R1C3 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trav3-3Q5R1C3 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trav3-3Q5R1C3 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav3-3Q5R1C3 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trav3-3Q5R1C3 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav3-3Q5R1C3 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trav3-3Q5R1C3 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav3-3Q5R1C3 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav3-3Q5R1C3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav3-3Q5R1C3 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav3-3Q5R1C3 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trav3-3Q5R1C3 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
Trav3-3Q5R1C3 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav3-3Q5R1C3 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trav3-3Q5R1C3 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Trav3-3Q5R1C3 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav3-3Q5R1C3 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trav3-3Q5R1C3 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav3-3Q5R1C3 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC19.59■□□□□ 0.73
Trav3-3Q5R1C3 Gm6206-201ENSMUST00000133472 2199 ntBASIC19.58■□□□□ 0.72
Trav3-3Q5R1C3 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC19.57■□□□□ 0.72
Trav3-3Q5R1C3 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav3-3Q5R1C3 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav3-3Q5R1C3 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Trav3-3Q5R1C3 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav3-3Q5R1C3 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav3-3Q5R1C3 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav3-3Q5R1C3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav3-3Q5R1C3 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav3-3Q5R1C3 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav3-3Q5R1C3 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav3-3Q5R1C3 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.51■□□□□ 0.71
Trav3-3Q5R1C3 Gm2415-204ENSMUST00000190235 2004 ntBASIC19.5■□□□□ 0.71
Trav3-3Q5R1C3 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trav3-3Q5R1C3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19.49■□□□□ 0.71
Trav3-3Q5R1C3 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav3-3Q5R1C3 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav3-3Q5R1C3 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav3-3Q5R1C3 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav3-3Q5R1C3 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav3-3Q5R1C3 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav3-3Q5R1C3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav3-3Q5R1C3 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav3-3Q5R1C3 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Trav3-3Q5R1C3 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Trav3-3Q5R1C3 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav3-3Q5R1C3 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trav3-3Q5R1C3 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trav3-3Q5R1C3 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav3-3Q5R1C3 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
Trav3-3Q5R1C3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Trav3-3Q5R1C3 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC19.35■□□□□ 0.69
Trav3-3Q5R1C3 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav3-3Q5R1C3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav3-3Q5R1C3 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav3-3Q5R1C3 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trav3-3Q5R1C3 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav3-3Q5R1C3 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav3-3Q5R1C3 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav3-3Q5R1C3 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms