Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.28■■□□□ 1.8
Ptchd3Q0EEE2 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ptchd3Q0EEE2 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ptchd3Q0EEE2 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Ptchd3Q0EEE2 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Ptchd3Q0EEE2 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Ptchd3Q0EEE2 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.18■■□□□ 1.78
Ptchd3Q0EEE2 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Ptchd3Q0EEE2 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Ptchd3Q0EEE2 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Ptchd3Q0EEE2 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.12■■□□□ 1.77
Ptchd3Q0EEE2 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Ptchd3Q0EEE2 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Ptchd3Q0EEE2 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Ptchd3Q0EEE2 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
Ptchd3Q0EEE2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
Ptchd3Q0EEE2 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Ptchd3Q0EEE2 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
Ptchd3Q0EEE2 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC25.94■■□□□ 1.74
Ptchd3Q0EEE2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Ptchd3Q0EEE2 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
Ptchd3Q0EEE2 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC25.89■■□□□ 1.74
Ptchd3Q0EEE2 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC25.86■■□□□ 1.73
Ptchd3Q0EEE2 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Ptchd3Q0EEE2 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Ptchd3Q0EEE2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.82■■□□□ 1.72
Ptchd3Q0EEE2 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC25.79■■□□□ 1.72
Ptchd3Q0EEE2 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ptchd3Q0EEE2 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC25.75■■□□□ 1.71
Ptchd3Q0EEE2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC25.75■■□□□ 1.71
Ptchd3Q0EEE2 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ptchd3Q0EEE2 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Ptchd3Q0EEE2 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Ptchd3Q0EEE2 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
Ptchd3Q0EEE2 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Ptchd3Q0EEE2 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Ptchd3Q0EEE2 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Ptchd3Q0EEE2 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
Ptchd3Q0EEE2 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC25.62■■□□□ 1.69
Ptchd3Q0EEE2 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
Ptchd3Q0EEE2 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
Ptchd3Q0EEE2 AC153504.1-201ENSMUST00000218379 2290 ntBASIC25.56■■□□□ 1.68
Ptchd3Q0EEE2 Rab21-202ENSMUST00000218831 843 ntBASIC25.55■■□□□ 1.68
Ptchd3Q0EEE2 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Ptchd3Q0EEE2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Ptchd3Q0EEE2 Gm2415-204ENSMUST00000190235 2004 ntBASIC25.49■■□□□ 1.67
Ptchd3Q0EEE2 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
Ptchd3Q0EEE2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC25.47■■□□□ 1.67
Ptchd3Q0EEE2 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Ptchd3Q0EEE2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC25.41■■□□□ 1.66
Ptchd3Q0EEE2 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
Ptchd3Q0EEE2 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ptchd3Q0EEE2 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Ptchd3Q0EEE2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ptchd3Q0EEE2 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ptchd3Q0EEE2 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ptchd3Q0EEE2 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
Ptchd3Q0EEE2 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Ptchd3Q0EEE2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
Ptchd3Q0EEE2 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Ptchd3Q0EEE2 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC25.29■■□□□ 1.64
Ptchd3Q0EEE2 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Ptchd3Q0EEE2 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Ptchd3Q0EEE2 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Ptchd3Q0EEE2 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ptchd3Q0EEE2 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Ptchd3Q0EEE2 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Ptchd3Q0EEE2 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Ptchd3Q0EEE2 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Ptchd3Q0EEE2 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Ptchd3Q0EEE2 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC25.25■■□□□ 1.63
Ptchd3Q0EEE2 Zfp131-207ENSMUST00000224946 1783 ntBASIC25.25■■□□□ 1.63
Ptchd3Q0EEE2 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Ptchd3Q0EEE2 Gm6658-202ENSMUST00000209493 1885 ntBASIC25.23■■□□□ 1.63
Ptchd3Q0EEE2 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Ptchd3Q0EEE2 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC25.22■■□□□ 1.63
Ptchd3Q0EEE2 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Ptchd3Q0EEE2 Gm25262-201ENSMUST00000174934 133 ntBASIC25.19■■□□□ 1.62
Ptchd3Q0EEE2 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC25.18■■□□□ 1.62
Ptchd3Q0EEE2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ptchd3Q0EEE2 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC25.17■■□□□ 1.62
Ptchd3Q0EEE2 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
Ptchd3Q0EEE2 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ptchd3Q0EEE2 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC25.11■■□□□ 1.61
Ptchd3Q0EEE2 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Ptchd3Q0EEE2 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
Ptchd3Q0EEE2 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Ptchd3Q0EEE2 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ptchd3Q0EEE2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
Ptchd3Q0EEE2 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Ptchd3Q0EEE2 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Ptchd3Q0EEE2 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ptchd3Q0EEE2 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ptchd3Q0EEE2 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Ptchd3Q0EEE2 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC25.02■■□□□ 1.6
Ptchd3Q0EEE2 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Ptchd3Q0EEE2 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC25.01■■□□□ 1.59
Ptchd3Q0EEE2 Zxda-201ENSMUST00000117281 2621 ntBASIC24.99■■□□□ 1.59
Ptchd3Q0EEE2 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Ptchd3Q0EEE2 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC24.94■■□□□ 1.58
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms