Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21,62■■□□□ 1,05
Cdx1P18111 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC21,62■■□□□ 1,05
Cdx1P18111 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21,6■■□□□ 1,05
Cdx1P18111 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC21,57■■□□□ 1,04
Cdx1P18111 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC21,56■■□□□ 1,04
Cdx1P18111 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC21,56■■□□□ 1,04
Cdx1P18111 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21,55■■□□□ 1,04
Cdx1P18111 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC21,54■■□□□ 1,04
Cdx1P18111 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21,54■■□□□ 1,04
Cdx1P18111 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21,53■■□□□ 1,04
Cdx1P18111 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21,5■■□□□ 1,03
Cdx1P18111 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC21,49■■□□□ 1,03
Cdx1P18111 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21,48■■□□□ 1,03
Cdx1P18111 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC21,46■■□□□ 1,03
Cdx1P18111 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21,45■■□□□ 1,02
Cdx1P18111 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21,44■■□□□ 1,02
Cdx1P18111 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC21,43■■□□□ 1,02
Cdx1P18111 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC21,41■■□□□ 1,02
Cdx1P18111 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21,4■■□□□ 1,02
Cdx1P18111 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC21,38■■□□□ 1,01
Cdx1P18111 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21,37■■□□□ 1,01
Cdx1P18111 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC21,35■■□□□ 1,01
Cdx1P18111 Gm27325-201ENSMUST00000175467 74 ntBASIC21,35■■□□□ 1,01
Cdx1P18111 Gm25262-201ENSMUST00000174934 133 ntBASIC21,34■■□□□ 1,01
Cdx1P18111 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21,34■■□□□ 1,01
Cdx1P18111 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC21,29■■□□□ 1
Cdx1P18111 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC21,26■□□□□ 0,99
Cdx1P18111 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21,26■□□□□ 0,99
Cdx1P18111 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21,22■□□□□ 0,99
Cdx1P18111 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21,22■□□□□ 0,99
Cdx1P18111 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21,22■□□□□ 0,99
Cdx1P18111 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC21,19■□□□□ 0,98
Cdx1P18111 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC21,16■□□□□ 0,98
Cdx1P18111 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21,16■□□□□ 0,98
Cdx1P18111 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC21,16■□□□□ 0,98
Cdx1P18111 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC21,15■□□□□ 0,98
Cdx1P18111 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC21,12■□□□□ 0,97
Cdx1P18111 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21,12■□□□□ 0,97
Cdx1P18111 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21,12■□□□□ 0,97
Cdx1P18111 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC21,12■□□□□ 0,97
Cdx1P18111 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21,09■□□□□ 0,97
Cdx1P18111 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21,09■□□□□ 0,97
Cdx1P18111 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC21,08■□□□□ 0,96
Cdx1P18111 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC21,07■□□□□ 0,96
Cdx1P18111 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC21,07■□□□□ 0,96
Cdx1P18111 Rab21-202ENSMUST00000218831 843 ntBASIC21,07■□□□□ 0,96
Cdx1P18111 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC21,06■□□□□ 0,96
Cdx1P18111 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21,05■□□□□ 0,96
Cdx1P18111 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC21,03■□□□□ 0,96
Cdx1P18111 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20,99■□□□□ 0,95
Cdx1P18111 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20,97■□□□□ 0,95
Cdx1P18111 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20,96■□□□□ 0,95
Cdx1P18111 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC20,95■□□□□ 0,94
Cdx1P18111 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20,94■□□□□ 0,94
Cdx1P18111 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20,93■□□□□ 0,94
Cdx1P18111 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20,93■□□□□ 0,94
Cdx1P18111 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC20,91■□□□□ 0,94
Cdx1P18111 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC20,87■□□□□ 0,93
Cdx1P18111 Gm9905-201ENSMUST00000065740 1845 ntBASIC20,87■□□□□ 0,93
Cdx1P18111 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20,86■□□□□ 0,93
Cdx1P18111 Gm26115-201ENSMUST00000175605 87 ntBASIC20,86■□□□□ 0,93
Cdx1P18111 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20,86■□□□□ 0,93
Cdx1P18111 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20,86■□□□□ 0,93
Cdx1P18111 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20,83■□□□□ 0,93
Cdx1P18111 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20,82■□□□□ 0,92
Cdx1P18111 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20,82■□□□□ 0,92
Cdx1P18111 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20,8■□□□□ 0,92
Cdx1P18111 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC20,8■□□□□ 0,92
Cdx1P18111 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20,79■□□□□ 0,92
Cdx1P18111 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC20,76■□□□□ 0,91
Cdx1P18111 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC20,76■□□□□ 0,91
Cdx1P18111 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC20,76■□□□□ 0,91
Cdx1P18111 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC20,76■□□□□ 0,91
Cdx1P18111 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20,76■□□□□ 0,91
Cdx1P18111 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20,76■□□□□ 0,91
Cdx1P18111 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20,75■□□□□ 0,91
Cdx1P18111 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC20,75■□□□□ 0,91
Cdx1P18111 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20,75■□□□□ 0,91
Cdx1P18111 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20,75■□□□□ 0,91
Cdx1P18111 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20,74■□□□□ 0,91
Cdx1P18111 Gm6206-201ENSMUST00000133472 2199 ntBASIC20,72■□□□□ 0,91
Cdx1P18111 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20,71■□□□□ 0,91
Cdx1P18111 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20,7■□□□□ 0,9
Cdx1P18111 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC20,69■□□□□ 0,9
Cdx1P18111 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC20,69■□□□□ 0,9
Cdx1P18111 Gm2415-204ENSMUST00000190235 2004 ntBASIC20,68■□□□□ 0,9
Cdx1P18111 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC20,68■□□□□ 0,9
Cdx1P18111 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC20,67■□□□□ 0,9
Cdx1P18111 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20,67■□□□□ 0,9
Cdx1P18111 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20,66■□□□□ 0,9
Cdx1P18111 Gm8109-201ENSMUST00000194076 746 ntBASIC20,66■□□□□ 0,9
Cdx1P18111 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC20,66■□□□□ 0,9
Cdx1P18111 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20,65■□□□□ 0,9
Cdx1P18111 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20,63■□□□□ 0,89
Cdx1P18111 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20,63■□□□□ 0,89
Cdx1P18111 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20,63■□□□□ 0,89
Cdx1P18111 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20,62■□□□□ 0,89
Cdx1P18111 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20,61■□□□□ 0,89
Cdx1P18111 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20,61■□□□□ 0,89
Cdx1P18111 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20,6■□□□□ 0,89
Retrieved 100 of 76,532 protein–RNA pairs in 31,7 ms