Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Col6a1Q04857 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC14.31□□□□□ -0.12
Col6a1Q04857 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Mir1943-201ENSMUST00000158276 73 ntBASIC14.31□□□□□ -0.12
Col6a1Q04857 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC14.31□□□□□ -0.12
Col6a1Q04857 Gm5896-201ENSMUST00000189662 1024 ntBASIC14.31□□□□□ -0.12
Col6a1Q04857 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC14.31□□□□□ -0.12
Col6a1Q04857 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC14.31□□□□□ -0.12
Col6a1Q04857 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC14.31□□□□□ -0.12
Col6a1Q04857 Gm10702-201ENSMUST00000098929 1268 ntBASIC14.31□□□□□ -0.12
Col6a1Q04857 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col6a1Q04857 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Col6a1Q04857 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm43423-201ENSMUST00000198390 2094 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC14.3□□□□□ -0.12
Col6a1Q04857 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm12616-201ENSMUST00000118594 382 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm6447-201ENSMUST00000118905 835 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm4760-201ENSMUST00000119663 1030 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm12624-201ENSMUST00000177615 382 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm12621-201ENSMUST00000177760 382 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm12615-201ENSMUST00000177970 382 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm12622-201ENSMUST00000177975 382 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm12627-201ENSMUST00000178412 382 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm12625-201ENSMUST00000179122 382 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm12614-201ENSMUST00000179586 382 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm12613-201ENSMUST00000180323 382 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm7467-201ENSMUST00000185173 652 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC14.3□□□□□ -0.12
Col6a1Q04857 AC122305.4-201ENSMUST00000216159 1206 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 n-R5s77-201ENSMUST00000083757 119 ntBASIC14.3□□□□□ -0.12
Col6a1Q04857 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Col6a1Q04857 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC14.3□□□□□ -0.12
Col6a1Q04857 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Col6a1Q04857 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Col6a1Q04857 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col6a1Q04857 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm14752-201ENSMUST00000120719 2075 ntBASIC14.29□□□□□ -0.12
Col6a1Q04857 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm20426-201ENSMUST00000173657 440 ntBASIC14.29□□□□□ -0.12
Col6a1Q04857 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm19963-201ENSMUST00000208413 1255 ntBASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col6a1Q04857 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Col6a1Q04857 Gm38094-201ENSMUST00000195864 2978 ntBASIC14.29□□□□□ -0.12
Col6a1Q04857 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms