Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A4P53420 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A4P53420 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.78■□□□□ 0.28
COL4A4P53420 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 AL691432.1-201ENST00000596308 1422 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 AHCYP2-201ENST00000430630 1300 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
COL4A4P53420 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A4P53420 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A4P53420 RNU1-114P-201ENST00000365297 166 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A4P53420 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A4P53420 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A4P53420 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.78■□□□□ 0.28
COL4A4P53420 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.78■□□□□ 0.28
COL4A4P53420 MIR4706-201ENST00000582134 82 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 HCG18-245ENST00000602550 559 ntTSL 4 BASIC16.78■□□□□ 0.28
COL4A4P53420 AC091812.3-201ENST00000621362 345 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 AC128714.1-201ENST00000637035 887 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 AC018735.1-201ENST00000437208 1502 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 AL121723.1-201ENST00000445194 1519 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 AL391005.1-201ENST00000623953 2435 ntBASIC16.77■□□□□ 0.28
COL4A4P53420 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.77■□□□□ 0.28
COL4A4P53420 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.77■□□□□ 0.28
COL4A4P53420 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
COL4A4P53420 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.77■□□□□ 0.28
COL4A4P53420 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
COL4A4P53420 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
COL4A4P53420 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
COL4A4P53420 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
COL4A4P53420 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.77■□□□□ 0.28
COL4A4P53420 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.77■□□□□ 0.28
COL4A4P53420 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.77■□□□□ 0.28
COL4A4P53420 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC16.77■□□□□ 0.28
COL4A4P53420 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.77■□□□□ 0.28
COL4A4P53420 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.77■□□□□ 0.28
COL4A4P53420 AC004898.1-201ENST00000451057 766 ntBASIC16.77■□□□□ 0.28
COL4A4P53420 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.77■□□□□ 0.28
COL4A4P53420 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A4P53420 EEF1DP1-201ENST00000585891 896 ntBASIC16.77■□□□□ 0.28
COL4A4P53420 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.77■□□□□ 0.28
COL4A4P53420 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
COL4A4P53420 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.77■□□□□ 0.27
COL4A4P53420 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A4P53420 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.77■□□□□ 0.27
COL4A4P53420 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A4P53420 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.27
COL4A4P53420 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A4P53420 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL4A4P53420 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A4P53420 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A4P53420 MIR33B-201ENST00000385104 96 ntBASIC16.76■□□□□ 0.27
COL4A4P53420 AC004987.2-201ENST00000395959 1148 ntBASIC16.76■□□□□ 0.27
COL4A4P53420 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC16.76■□□□□ 0.27
COL4A4P53420 HSPB1P2-201ENST00000448722 546 ntBASIC16.76■□□□□ 0.27
COL4A4P53420 AC005077.2-201ENST00000449786 690 ntBASIC16.76■□□□□ 0.27
COL4A4P53420 LDHBP1-201ENST00000455730 1119 ntBASIC16.76■□□□□ 0.27
COL4A4P53420 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.76■□□□□ 0.27
COL4A4P53420 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.76■□□□□ 0.27
COL4A4P53420 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 IMP3P2-201ENST00000489760 475 ntBASIC16.76■□□□□ 0.27
COL4A4P53420 RPSAP36-202ENST00000494591 1261 ntBASIC16.76■□□□□ 0.27
COL4A4P53420 AC243562.2-201ENST00000561247 970 ntBASIC16.76■□□□□ 0.27
COL4A4P53420 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.76■□□□□ 0.27
COL4A4P53420 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.76■□□□□ 0.27
COL4A4P53420 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.76■□□□□ 0.27
COL4A4P53420 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.76■□□□□ 0.27
COL4A4P53420 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL4A4P53420 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.76■□□□□ 0.27
COL4A4P53420 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms