Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Gm3365-201ENSMUST00000216296 1480 ntBASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Mir7023-201ENSMUST00000185093 64 ntBASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Gm19220-201ENSMUST00000222682 803 ntBASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Gm18630-201ENSMUST00000222109 1397 ntBASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cdk5rap3Q99LM2 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Gm5303-201ENSMUST00000117943 1252 ntBASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Gm15920-201ENSMUST00000118998 402 ntBASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Gm11978-201ENSMUST00000122315 466 ntBASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 AC135669.1-202ENSMUST00000216742 540 ntBASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 AC124732.1-201ENSMUST00000221551 910 ntBASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cdk5rap3Q99LM2 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Gm9279-201ENSMUST00000223175 1606 ntBASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Gm16215-201ENSMUST00000161990 637 ntBASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Gm20949-201ENSMUST00000206478 952 ntBASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 AC156560.2-201ENSMUST00000221232 264 ntBASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 AC123834.1-201ENSMUST00000225346 2043 ntBASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
Cdk5rap3Q99LM2 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms