Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Mir1894-201ENSMUST00000122802 81 ntBASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Mir1938-201ENSMUST00000158746 100 ntBASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Gm38037-201ENSMUST00000192600 1624 ntBASIC13.17□□□□□ -0.3
Sh3rf1Q69ZI1 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Gm7049-201ENSMUST00000223520 1712 ntBASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 AC114008.2-201ENSMUST00000227699 1347 ntBASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 CT009757.3-201ENSMUST00000223367 2320 ntBASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 AY702102-202ENSMUST00000194651 1173 ntBASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Gm43094-201ENSMUST00000196549 921 ntBASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Gm43630-201ENSMUST00000201550 776 ntBASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 AC168058.1-201ENSMUST00000219521 2282 ntBASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Sh3rf1Q69ZI1 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Gm5912-201ENSMUST00000122282 1438 ntBASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Gm13385-201ENSMUST00000121089 220 ntBASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Mir1982-201ENSMUST00000157368 74 ntBASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sh3rf1Q69ZI1 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms