Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Gm6756-201ENSMUST00000180647 1620 ntBASIC10.51□□□□□ -0.73
Cdx1P18111 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
Cdx1P18111 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 4631405K08Rik-201ENSMUST00000180420 2112 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Daam2-202ENSMUST00000224595 1926 ntBASIC10.51□□□□□ -0.73
Cdx1P18111 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC10.51□□□□□ -0.73
Cdx1P18111 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
Cdx1P18111 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC10.51□□□□□ -0.73
Cdx1P18111 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC10.51□□□□□ -0.73
Cdx1P18111 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
Cdx1P18111 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC10.51□□□□□ -0.73
Cdx1P18111 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Cdx1P18111 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
Cdx1P18111 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
Cdx1P18111 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC10.51□□□□□ -0.73
Cdx1P18111 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
Cdx1P18111 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Cdx1P18111 AC241621.2-201ENSMUST00000223991 2151 ntBASIC10.5□□□□□ -0.73
Cdx1P18111 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
Cdx1P18111 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC10.5□□□□□ -0.73
Cdx1P18111 Gm36957-201ENSMUST00000192982 2824 ntBASIC10.5□□□□□ -0.73
Cdx1P18111 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Gm44851-201ENSMUST00000205735 2309 ntBASIC10.5□□□□□ -0.73
Cdx1P18111 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC10.5□□□□□ -0.73
Cdx1P18111 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC10.5□□□□□ -0.73
Cdx1P18111 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC10.5□□□□□ -0.73
Cdx1P18111 Gm15653-201ENSMUST00000119247 907 ntBASIC10.5□□□□□ -0.73
Cdx1P18111 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC10.5□□□□□ -0.73
Cdx1P18111 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Gm44855-201ENSMUST00000205725 362 ntBASIC10.5□□□□□ -0.73
Cdx1P18111 AC102291.3-201ENSMUST00000226566 405 ntBASIC10.5□□□□□ -0.73
Cdx1P18111 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Gm43860-201ENSMUST00000201742 2705 ntBASIC10.5□□□□□ -0.73
Cdx1P18111 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
Cdx1P18111 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
Cdx1P18111 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC10.5□□□□□ -0.73
Cdx1P18111 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC10.5□□□□□ -0.73
Cdx1P18111 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Cdx1P18111 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 AC137842.1-201ENSMUST00000227896 2064 ntBASIC10.49□□□□□ -0.73
Cdx1P18111 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 AC157950.1-201ENSMUST00000217561 2168 ntBASIC10.49□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms