Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Gm29608-201ENSMUST00000190444 463 ntBASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Gm37917-201ENSMUST00000194711 392 ntBASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Gm18307-201ENSMUST00000206864 949 ntBASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Gm7104-201ENSMUST00000179741 2532 ntBASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 AC155298.2-201ENSMUST00000225485 6226 ntBASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Ccdc40Q8BI79 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 AC154404.1-201ENSMUST00000223601 2077 ntBASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Gm12859-201ENSMUST00000117834 427 ntBASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Gm5866-201ENSMUST00000177881 973 ntBASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 AC156560.2-201ENSMUST00000221232 264 ntBASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Gm38273-201ENSMUST00000194987 2382 ntBASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Gm13722-201ENSMUST00000117964 3066 ntBASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Ccdc40Q8BI79 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Gm16342-201ENSMUST00000124025 1025 ntBASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Mir7654-201ENSMUST00000185082 70 ntBASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms