Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
COL5A3P25940 CD8B2-202ENST00000417670 633 ntBASIC19.72■□□□□ 0.75
COL5A3P25940 IMP3P2-201ENST00000489760 475 ntBASIC19.72■□□□□ 0.75
COL5A3P25940 AC022217.1-201ENST00000521069 738 ntBASIC19.72■□□□□ 0.75
COL5A3P25940 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
COL5A3P25940 AC104982.3-201ENST00000581995 514 ntBASIC19.72■□□□□ 0.75
COL5A3P25940 PPY2P-201ENST00000582808 702 ntBASIC19.72■□□□□ 0.75
COL5A3P25940 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.72■□□□□ 0.75
COL5A3P25940 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC19.72■□□□□ 0.75
COL5A3P25940 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.72■□□□□ 0.75
COL5A3P25940 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
COL5A3P25940 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.72■□□□□ 0.75
COL5A3P25940 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
COL5A3P25940 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL5A3P25940 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A3P25940 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A3P25940 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A3P25940 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A3P25940 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC19.71■□□□□ 0.75
COL5A3P25940 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A3P25940 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 NCK2-206ENST00000522586 490 ntTSL 5 BASIC19.71■□□□□ 0.75
COL5A3P25940 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.71■□□□□ 0.75
COL5A3P25940 AC013355.1-201ENST00000562625 723 ntBASIC19.71■□□□□ 0.75
COL5A3P25940 RN7SL574P-201ENST00000581512 297 ntBASIC19.71■□□□□ 0.75
COL5A3P25940 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC19.71■□□□□ 0.75
COL5A3P25940 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.71■□□□□ 0.75
COL5A3P25940 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A3P25940 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC19.71■□□□□ 0.75
COL5A3P25940 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.71■□□□□ 0.75
COL5A3P25940 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC19.71■□□□□ 0.75
COL5A3P25940 AL139094.1-201ENST00000405549 1188 ntBASIC19.71■□□□□ 0.75
COL5A3P25940 RGS5-214ENST00000429865 754 ntTSL 3 BASIC19.71■□□□□ 0.75
COL5A3P25940 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC19.71■□□□□ 0.75
COL5A3P25940 FAM8A4P-201ENST00000435433 1213 ntBASIC19.71■□□□□ 0.75
COL5A3P25940 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC19.71■□□□□ 0.75
COL5A3P25940 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL5A3P25940 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A3P25940 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
COL5A3P25940 RNF41-210ENST00000552244 716 ntTSL 3 BASIC19.71■□□□□ 0.75
COL5A3P25940 AC079328.1-201ENST00000560358 952 ntBASIC19.71■□□□□ 0.75
COL5A3P25940 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.71■□□□□ 0.75
COL5A3P25940 NKG7-204ENST00000595217 816 ntTSL 2 BASIC19.71■□□□□ 0.75
COL5A3P25940 ENPP7P14-201ENST00000621765 1040 ntBASIC19.71■□□□□ 0.75
COL5A3P25940 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A3P25940 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A3P25940 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
COL5A3P25940 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A3P25940 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
COL5A3P25940 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
COL5A3P25940 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A3P25940 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A3P25940 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A3P25940 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
COL5A3P25940 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
COL5A3P25940 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A3P25940 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL5A3P25940 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL5A3P25940 AL662890.1-201ENST00000396818 632 ntBASIC19.7■□□□□ 0.74
COL5A3P25940 NUS1P3-201ENST00000423502 862 ntBASIC19.7■□□□□ 0.74
COL5A3P25940 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC19.7■□□□□ 0.74
COL5A3P25940 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC19.7■□□□□ 0.74
COL5A3P25940 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC19.7■□□□□ 0.74
COL5A3P25940 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC19.7■□□□□ 0.74
COL5A3P25940 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC19.7■□□□□ 0.74
COL5A3P25940 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC19.7■□□□□ 0.74
COL5A3P25940 RETN-203ENST00000629642 400 ntTSL 5 BASIC19.7■□□□□ 0.74
COL5A3P25940 AL645728.2-202ENST00000641679 227 ntBASIC19.7■□□□□ 0.74
COL5A3P25940 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL5A3P25940 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL5A3P25940 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms