Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Sdc1P18828 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC10.62□□□□□ -0.71
Sdc1P18828 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC10.62□□□□□ -0.71
Sdc1P18828 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Sdc1P18828 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC10.62□□□□□ -0.71
Sdc1P18828 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC10.62□□□□□ -0.71
Sdc1P18828 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC10.62□□□□□ -0.71
Sdc1P18828 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Gm17807-201ENSMUST00000186869 298 ntBASIC10.62□□□□□ -0.71
Sdc1P18828 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Sdc1P18828 AC158529.1-201ENSMUST00000223618 239 ntBASIC10.62□□□□□ -0.71
Sdc1P18828 AC154621.1-201ENSMUST00000226155 1119 ntBASIC10.62□□□□□ -0.71
Sdc1P18828 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC10.62□□□□□ -0.71
Sdc1P18828 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC10.62□□□□□ -0.71
Sdc1P18828 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC10.62□□□□□ -0.71
Sdc1P18828 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC10.62□□□□□ -0.71
Sdc1P18828 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Sdc1P18828 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 AC168058.1-201ENSMUST00000219521 2282 ntBASIC10.61□□□□□ -0.71
Sdc1P18828 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Gm42466-201ENSMUST00000202099 1301 ntBASIC10.61□□□□□ -0.71
Sdc1P18828 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Sdc1P18828 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Sdc1P18828 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC10.61□□□□□ -0.71
Sdc1P18828 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC10.61□□□□□ -0.71
Sdc1P18828 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC10.61□□□□□ -0.71
Sdc1P18828 Gm11557-201ENSMUST00000120200 1008 ntBASIC10.61□□□□□ -0.71
Sdc1P18828 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC10.61□□□□□ -0.71
Sdc1P18828 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC10.61□□□□□ -0.71
Sdc1P18828 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Sdc1P18828 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Sdc1P18828 Gm8927-201ENSMUST00000181978 981 ntBASIC10.61□□□□□ -0.71
Sdc1P18828 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Gm3222-201ENSMUST00000071282 990 ntBASIC10.61□□□□□ -0.71
Sdc1P18828 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Sdc1P18828 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC10.61□□□□□ -0.71
Sdc1P18828 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Sdc1P18828 Map1b-203ENSMUST00000223725 2669 ntBASIC10.61□□□□□ -0.71
Sdc1P18828 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Sdc1P18828 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC10.6□□□□□ -0.71
Sdc1P18828 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Sdc1P18828 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC10.6□□□□□ -0.71
Sdc1P18828 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Sdc1P18828 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC10.6□□□□□ -0.71
Sdc1P18828 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Sdc1P18828 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms