Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Col6a1Q04857 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Col6a1Q04857 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Gm15276-201ENSMUST00000145953 498 ntBASIC14.39□□□□□ -0.11
Col6a1Q04857 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Col6a1Q04857 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC14.39□□□□□ -0.11
Col6a1Q04857 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC14.39□□□□□ -0.11
Col6a1Q04857 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC14.39□□□□□ -0.11
Col6a1Q04857 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC14.39□□□□□ -0.11
Col6a1Q04857 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC14.39□□□□□ -0.11
Col6a1Q04857 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC14.39□□□□□ -0.11
Col6a1Q04857 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC14.39□□□□□ -0.11
Col6a1Q04857 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Gm8862-201ENSMUST00000198379 1346 ntBASIC14.39□□□□□ -0.11
Col6a1Q04857 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC14.39□□□□□ -0.11
Col6a1Q04857 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col6a1Q04857 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Gm16202-201ENSMUST00000117532 544 ntBASIC14.38□□□□□ -0.11
Col6a1Q04857 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC14.38□□□□□ -0.11
Col6a1Q04857 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Gm26956-201ENSMUST00000182176 986 ntBASIC14.38□□□□□ -0.11
Col6a1Q04857 Gm43378-201ENSMUST00000199336 582 ntBASIC14.38□□□□□ -0.11
Col6a1Q04857 Gm8099-201ENSMUST00000200510 742 ntBASIC14.38□□□□□ -0.11
Col6a1Q04857 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC14.38□□□□□ -0.11
Col6a1Q04857 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC14.38□□□□□ -0.11
Col6a1Q04857 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col6a1Q04857 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Col6a1Q04857 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
Col6a1Q04857 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Col6a1Q04857 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC14.37□□□□□ -0.11
Col6a1Q04857 Gm11331-201ENSMUST00000119764 288 ntBASIC14.37□□□□□ -0.11
Col6a1Q04857 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC14.37□□□□□ -0.11
Col6a1Q04857 Gm8546-201ENSMUST00000178288 1264 ntBASIC14.37□□□□□ -0.11
Col6a1Q04857 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC14.37□□□□□ -0.11
Col6a1Q04857 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC14.37□□□□□ -0.11
Col6a1Q04857 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC14.37□□□□□ -0.11
Col6a1Q04857 AC153974.2-201ENSMUST00000218577 1025 ntBASIC14.37□□□□□ -0.11
Col6a1Q04857 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Col6a1Q04857 Gm14267-206ENSMUST00000226870 1209 ntBASIC14.37□□□□□ -0.11
Col6a1Q04857 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Gm20632-201ENSMUST00000176760 2427 ntBASIC14.37□□□□□ -0.11
Col6a1Q04857 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col6a1Q04857 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col6a1Q04857 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 AC139054.1-201ENSMUST00000226898 1598 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms