Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 DGCR5-201ENST00000399539 862 ntBASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 COX5BP8-201ENST00000416911 349 ntBASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 GAPDHP21-201ENST00000450301 1010 ntBASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 AC008494.3-201ENST00000606615 944 ntBASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 AC007431.3-201ENST00000623221 587 ntBASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC60Q8IWA6 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 AC087499.6-201ENST00000411576 835 ntBASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 TIMM17BP1-201ENST00000545713 516 ntBASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 AL450472.2-201ENST00000603663 1156 ntBASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 AL358472.5-202ENST00000641448 1267 ntBASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC60Q8IWA6 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC60Q8IWA6 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
CCDC60Q8IWA6 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
CCDC60Q8IWA6 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC60Q8IWA6 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC60Q8IWA6 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC60Q8IWA6 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC60Q8IWA6 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC60Q8IWA6 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC60Q8IWA6 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CCDC60Q8IWA6 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms