Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm9678-201ENSMUST00000198979 1149 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm4768-201ENSMUST00000206199 686 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm18556-201ENSMUST00000219748 1031 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm18615-201ENSMUST00000222919 1031 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 AC126253.1-202ENSMUST00000226732 835 ntBASIC14.42□□□□□ -0.1
Col6a1Q04857 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Col6a1Q04857 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Col6a1Q04857 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Col6a1Q04857 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC14.42□□□□□ -0.1
Col6a1Q04857 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Col6a1Q04857 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col6a1Q04857 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Gm12020-201ENSMUST00000119030 2042 ntBASIC14.41□□□□□ -0.1
Col6a1Q04857 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Gm14130-201ENSMUST00000118417 987 ntBASIC14.41□□□□□ -0.1
Col6a1Q04857 Gm13570-201ENSMUST00000140763 309 ntBASIC14.41□□□□□ -0.1
Col6a1Q04857 Gm25732-201ENSMUST00000175168 60 ntBASIC14.41□□□□□ -0.1
Col6a1Q04857 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Col6a1Q04857 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC14.41□□□□□ -0.1
Col6a1Q04857 Gm44967-201ENSMUST00000207047 631 ntBASIC14.41□□□□□ -0.1
Col6a1Q04857 AC154680.1-201ENSMUST00000224376 859 ntBASIC14.41□□□□□ -0.1
Col6a1Q04857 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC14.41□□□□□ -0.1
Col6a1Q04857 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
Col6a1Q04857 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC14.41□□□□□ -0.1
Col6a1Q04857 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Col6a1Q04857 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Col6a1Q04857 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col6a1Q04857 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC14.4□□□□□ -0.1
Col6a1Q04857 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Col6a1Q04857 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Col6a1Q04857 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC14.4□□□□□ -0.1
Col6a1Q04857 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC14.4□□□□□ -0.1
Col6a1Q04857 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Col6a1Q04857 Gm37042-201ENSMUST00000193816 581 ntBASIC14.4□□□□□ -0.1
Col6a1Q04857 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Col6a1Q04857 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC14.4□□□□□ -0.1
Col6a1Q04857 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Col6a1Q04857 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Col6a1Q04857 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Col6a1Q04857 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Gm38346-201ENSMUST00000192379 2639 ntBASIC14.4□□□□□ -0.1
Col6a1Q04857 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col6a1Q04857 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.11
Col6a1Q04857 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 AC123857.2-201ENSMUST00000225756 1582 ntBASIC14.39□□□□□ -0.11
Col6a1Q04857 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col6a1Q04857 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms