Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Gm13823-201ENSMUST00000119930 345 ntBASIC10.57□□□□□ -0.72
Cdx1P18111 Gm11424-201ENSMUST00000121929 829 ntBASIC10.57□□□□□ -0.72
Cdx1P18111 Gm27533-201ENSMUST00000183800 152 ntBASIC10.57□□□□□ -0.72
Cdx1P18111 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC10.57□□□□□ -0.72
Cdx1P18111 Gm27838-201ENSMUST00000184829 128 ntBASIC10.57□□□□□ -0.72
Cdx1P18111 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC10.57□□□□□ -0.72
Cdx1P18111 Gm44344-201ENSMUST00000200287 129 ntBASIC10.57□□□□□ -0.72
Cdx1P18111 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Cdx1P18111 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC10.57□□□□□ -0.72
Cdx1P18111 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Cdx1P18111 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC10.57□□□□□ -0.72
Cdx1P18111 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC10.57□□□□□ -0.72
Cdx1P18111 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC10.57□□□□□ -0.72
Cdx1P18111 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Cdx1P18111 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Cdx1P18111 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC10.56□□□□□ -0.72
Cdx1P18111 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Gm37849-201ENSMUST00000194722 1881 ntBASIC10.56□□□□□ -0.72
Cdx1P18111 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC10.56□□□□□ -0.72
Cdx1P18111 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC10.56□□□□□ -0.72
Cdx1P18111 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Cdx1P18111 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 AC107453.4-201ENSMUST00000227068 1817 ntBASIC10.56□□□□□ -0.72
Cdx1P18111 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Cdx1P18111 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Cdx1P18111 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC10.55□□□□□ -0.72
Cdx1P18111 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC10.55□□□□□ -0.72
Cdx1P18111 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Gm43622-201ENSMUST00000200140 2019 ntBASIC10.55□□□□□ -0.72
Cdx1P18111 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
Cdx1P18111 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
Cdx1P18111 Gm5566-201ENSMUST00000116118 459 ntBASIC10.55□□□□□ -0.72
Cdx1P18111 Gm7488-201ENSMUST00000117148 684 ntBASIC10.55□□□□□ -0.72
Cdx1P18111 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC10.55□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 54.1 ms