Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP28Q96RU2 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.41■□□□□ 0.54
USP28Q96RU2 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.41■□□□□ 0.54
USP28Q96RU2 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP28Q96RU2 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP28Q96RU2 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.41■□□□□ 0.54
USP28Q96RU2 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 TFAMP1-201ENST00000412727 736 ntBASIC18.41■□□□□ 0.54
USP28Q96RU2 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.41■□□□□ 0.54
USP28Q96RU2 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
USP28Q96RU2 AL671277.1-201ENST00000429656 993 ntBASIC18.41■□□□□ 0.54
USP28Q96RU2 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
USP28Q96RU2 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
USP28Q96RU2 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
USP28Q96RU2 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP28Q96RU2 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
USP28Q96RU2 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 AC027307.2-201ENST00000591252 911 ntBASIC18.41■□□□□ 0.54
USP28Q96RU2 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.41■□□□□ 0.54
USP28Q96RU2 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 AP002414.2-201ENST00000591780 3365 ntBASIC18.41■□□□□ 0.54
USP28Q96RU2 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
USP28Q96RU2 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.41■□□□□ 0.54
USP28Q96RU2 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP28Q96RU2 AKAP8P1-201ENST00000434743 1349 ntBASIC18.41■□□□□ 0.54
USP28Q96RU2 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP28Q96RU2 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
USP28Q96RU2 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.41■□□□□ 0.54
USP28Q96RU2 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.41■□□□□ 0.54
USP28Q96RU2 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
USP28Q96RU2 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.41■□□□□ 0.54
USP28Q96RU2 AC090616.6-203ENST00000579186 1945 ntBASIC18.41■□□□□ 0.54
USP28Q96RU2 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.41■□□□□ 0.54
USP28Q96RU2 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.41■□□□□ 0.54
USP28Q96RU2 AL691432.1-201ENST00000596308 1422 ntBASIC18.4■□□□□ 0.54
USP28Q96RU2 TMBIM7P-203ENST00000641617 1718 ntBASIC18.4■□□□□ 0.54
USP28Q96RU2 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.4■□□□□ 0.54
USP28Q96RU2 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
USP28Q96RU2 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 BNIP3P1-202ENST00000550043 1585 ntBASIC18.4■□□□□ 0.54
USP28Q96RU2 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
USP28Q96RU2 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.4■□□□□ 0.54
USP28Q96RU2 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.4■□□□□ 0.54
USP28Q96RU2 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.4■□□□□ 0.54
USP28Q96RU2 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.4■□□□□ 0.54
USP28Q96RU2 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.4■□□□□ 0.54
USP28Q96RU2 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.4■□□□□ 0.54
USP28Q96RU2 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
USP28Q96RU2 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.4■□□□□ 0.54
USP28Q96RU2 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.4■□□□□ 0.54
USP28Q96RU2 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
USP28Q96RU2 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.4■□□□□ 0.54
USP28Q96RU2 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
USP28Q96RU2 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP28Q96RU2 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.39■□□□□ 0.54
USP28Q96RU2 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.39■□□□□ 0.54
USP28Q96RU2 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
USP28Q96RU2 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
USP28Q96RU2 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.39■□□□□ 0.54
USP28Q96RU2 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
USP28Q96RU2 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
USP28Q96RU2 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.39■□□□□ 0.53
USP28Q96RU2 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP28Q96RU2 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP28Q96RU2 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
USP28Q96RU2 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP28Q96RU2 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP28Q96RU2 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP28Q96RU2 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP28Q96RU2 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP28Q96RU2 FAM58CP-201ENST00000435741 640 ntBASIC18.39■□□□□ 0.53
USP28Q96RU2 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.39■□□□□ 0.53
USP28Q96RU2 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.39■□□□□ 0.53
USP28Q96RU2 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.39■□□□□ 0.53
USP28Q96RU2 AC008267.7-201ENST00000624570 1194 ntBASIC18.39■□□□□ 0.53
USP28Q96RU2 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP28Q96RU2 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP28Q96RU2 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.39■□□□□ 0.53
USP28Q96RU2 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms