Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Gm24644-201ENSMUST00000157114 139 ntBASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Gm43818-201ENSMUST00000200605 466 ntBASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Gm17330-201ENSMUST00000221047 165 ntBASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps53Q8CCB4 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Gm27572-201ENSMUST00000183702 255 ntBASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Gm5370-201ENSMUST00000187187 574 ntBASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Gm7553-201ENSMUST00000185805 1426 ntBASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Gm43134-201ENSMUST00000199434 1886 ntBASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Gm18222-201ENSMUST00000202416 1387 ntBASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Vps53Q8CCB4 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Gm9257-201ENSMUST00000221254 232 ntBASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Gm24447-201ENSMUST00000083977 338 ntBASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Gm44891-201ENSMUST00000208817 2223 ntBASIC15.21■□□□□ 0.03
Vps53Q8CCB4 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Vps53Q8CCB4 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Vps53Q8CCB4 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Vps53Q8CCB4 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Vps53Q8CCB4 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Vps53Q8CCB4 Gm43570-201ENSMUST00000199951 3688 ntBASIC15.21■□□□□ 0.02
Vps53Q8CCB4 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Vps53Q8CCB4 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
Vps53Q8CCB4 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms