Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Gm12846-201ENSMUST00000120431 1373 ntBASIC15.4■□□□□ 0.06
Trim56Q80VI1 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Gm11591-201ENSMUST00000120063 702 ntBASIC15.4■□□□□ 0.06
Trim56Q80VI1 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Gm4768-201ENSMUST00000206199 686 ntBASIC15.4■□□□□ 0.06
Trim56Q80VI1 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 n-R5s77-201ENSMUST00000083757 119 ntBASIC15.4■□□□□ 0.06
Trim56Q80VI1 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trim56Q80VI1 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC15.39■□□□□ 0.06
Trim56Q80VI1 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Gm12742-201ENSMUST00000117326 410 ntBASIC15.39■□□□□ 0.05
Trim56Q80VI1 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
Trim56Q80VI1 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Gm37644-201ENSMUST00000192190 2270 ntBASIC15.39■□□□□ 0.05
Trim56Q80VI1 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim56Q80VI1 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
Trim56Q80VI1 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 AC154747.3-201ENSMUST00000224471 3470 ntBASIC15.38■□□□□ 0.05
Trim56Q80VI1 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC15.38■□□□□ 0.05
Trim56Q80VI1 Gm43630-201ENSMUST00000201550 776 ntBASIC15.38■□□□□ 0.05
Trim56Q80VI1 Gm17823-201ENSMUST00000217830 1006 ntBASIC15.38■□□□□ 0.05
Trim56Q80VI1 Gm4935-201ENSMUST00000221316 1198 ntBASIC15.38■□□□□ 0.05
Trim56Q80VI1 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 71.7 ms