Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Mir7684-201ENSMUST00000183858 60 ntBASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 AC154846.1-201ENSMUST00000226278 862 ntBASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 AC131997.1-201ENSMUST00000228611 1229 ntBASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ddx28Q9CWT6 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Mir6977-201ENSMUST00000184960 64 ntBASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Gm18905-201ENSMUST00000205454 928 ntBASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms