Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Gm13600-201ENSMUST00000117949 744 ntBASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Gm4726-201ENSMUST00000135604 736 ntBASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Gm6019-201ENSMUST00000148369 736 ntBASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 AC154184.3-201ENSMUST00000225620 1090 ntBASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Olfr1230-201ENSMUST00000099787 918 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col4a4Q9QZR9 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Gm28719-201ENSMUST00000187779 1757 ntBASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Ighv4-2-201ENSMUST00000192975 362 ntBASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Gm9072-201ENSMUST00000218390 1514 ntBASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 CT571245.2-201ENSMUST00000218421 305 ntBASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Gm9111-201ENSMUST00000219394 709 ntBASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col4a4Q9QZR9 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Gm16071-201ENSMUST00000119589 793 ntBASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Gm17826-201ENSMUST00000189720 798 ntBASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 AC159376.1-201ENSMUST00000218504 630 ntBASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Mir483-201ENSMUST00000093631 73 ntBASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col4a4Q9QZR9 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms