Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm44985-201ENSMUST00000206202 1016 ntBASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC13.49□□□□□ -0.25
Vps28Q9D1C8 AC155237.1-201ENSMUST00000226196 1279 ntBASIC13.49□□□□□ -0.25
Vps28Q9D1C8 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Gm4782-201ENSMUST00000168705 2046 ntBASIC13.49□□□□□ -0.25
Vps28Q9D1C8 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 AC096628.2-201ENSMUST00000225443 1413 ntBASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Gm12203-201ENSMUST00000118235 598 ntBASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Gm12209-201ENSMUST00000120089 596 ntBASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Gm9299-201ENSMUST00000206392 1140 ntBASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Ssr1-203ENSMUST00000225246 1825 ntBASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Vps28Q9D1C8 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Gm16202-201ENSMUST00000117532 544 ntBASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Vps28Q9D1C8 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Gm11618-201ENSMUST00000117946 267 ntBASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Vps28Q9D1C8 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC13.46□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 70.2 ms